Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I13
         (413 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   1.2  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   2.7  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   4.8  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
 Frame = +3

Query: 27  SHQSPRPCKQGAKCTDI---FLCR 89
           SH     CK G  C D+   F+CR
Sbjct: 146 SHCDHTTCKNGGTCQDLGKTFMCR 169



 Score = 21.8 bits (44), Expect = 2.7
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = +3

Query: 36  SPRPCKQGAKCTD 74
           SP PC+    C D
Sbjct: 111 SPNPCRNNGSCVD 123


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +3

Query: 39  PRPCKQGAKCTDI 77
           P PC+ G  C D+
Sbjct: 228 PNPCQNGGTCHDL 240


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 111 PNTIGSRNGTGICPCIWRLAYRDVEI 34
           PN I   NGTG+     RLA  D+ +
Sbjct: 161 PNNIILGNGTGVQLVPTRLANGDIAL 186


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,030
Number of Sequences: 336
Number of extensions: 2109
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9068614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)