Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_I13
(413 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529... 141 2e-34
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044... 141 2e-34
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381... 141 2e-34
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 135 1e-32
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407... 129 1e-30
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 128 1e-30
08_02_0383 - 16539472-16539633,16543044-16543205 33 0.12
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 29 1.1
03_05_0248 + 22348504-22348568,22349064-22349371,22349476-223500... 29 1.9
11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591 28 2.6
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 27 4.5
08_02_1393 - 26706198-26706592,26707055-26707301,26707407-267082... 27 5.9
>04_04_0417 -
25052305-25052398,25052583-25052672,25052740-25052905,
25053547-25053647,25053735-25053775,25054170-25054181
Length = 167
Score = 141 bits (342), Expect = 2e-34
Identities = 71/124 (57%), Positives = 85/124 (68%), Gaps = 12/124 (9%)
Frame = -2
Query: 382 MADQTEKAFQKQATVFLNRKGGMKRKDM-----RHHKNVGLGFKTPREAIEGTYIDKKCP 218
MA+QTE+AF KQ VFL K K K R KN+GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTERAFLKQPKVFLCPKKTTKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCP 60
Query: 217 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNR-------FEKRHRNMSVHLA 59
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R +EKRH N+ H++
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQVNLVAGYEKRHSNIPAHIS 120
Query: 58 PCLQ 47
PC +
Sbjct: 121 PCFR 124
>07_03_0920 -
22603868-22603964,22604110-22604222,22604281-22604429,
22604732-22604832,22604917-22604957,22605584-22605595
Length = 170
Score = 141 bits (341), Expect = 2e-34
Identities = 71/126 (56%), Positives = 88/126 (69%), Gaps = 14/126 (11%)
Frame = -2
Query: 382 MADQTEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCP 218
MA+QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 217 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYN---------RFEKRHRNMSVH 65
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R+EKRH N+ H
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQGANLPPCRYEKRHSNIPAH 120
Query: 64 LAPCLQ 47
++PC +
Sbjct: 121 VSPCFR 126
>04_04_1134 +
31137326-31137337,31137964-31138004,31138089-31138189,
31138489-31138637,31138696-31138808,31138954-31139050
Length = 170
Score = 141 bits (341), Expect = 2e-34
Identities = 71/126 (56%), Positives = 88/126 (69%), Gaps = 14/126 (11%)
Frame = -2
Query: 382 MADQTEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCP 218
MA+QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 217 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYN---------RFEKRHRNMSVH 65
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R+EKRH N+ H
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQGANLPPCRYEKRHSNIPAH 120
Query: 64 LAPCLQ 47
++PC +
Sbjct: 121 VSPCFR 126
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 135 bits (327), Expect = 1e-32
Identities = 61/106 (57%), Positives = 76/106 (71%), Gaps = 4/106 (3%)
Frame = -2
Query: 352 KQATVFLNRKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRI 185
+Q F +K G +K R KN+GLGFKTPREAIEGTYIDKKCPFTG VSIRGRI
Sbjct: 3 EQVLDFSPKKSGKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRI 62
Query: 184 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLAPCLQ 47
+ G KM RTI++RR+YLH++ KY R+EKRH N+ H++PC +
Sbjct: 63 IAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR 108
>04_04_1135 +
31140032-31140043,31140552-31140592,31140680-31140780,
31141113-31141419,31141565-31141661
Length = 185
Score = 129 bits (311), Expect = 1e-30
Identities = 71/141 (50%), Positives = 88/141 (62%), Gaps = 29/141 (20%)
Frame = -2
Query: 382 MADQTEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCP 218
MA+QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 217 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYN--------------------- 101
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQVNNYGFYLCFFSFFFPISD 120
Query: 100 ---RFEKRHRNMSVHLAPCLQ 47
R+EKRH N+ H++PC +
Sbjct: 121 LGCRYEKRHSNIPAHVSPCFR 141
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 128 bits (310), Expect = 1e-30
Identities = 63/100 (63%), Positives = 75/100 (75%), Gaps = 5/100 (5%)
Frame = -2
Query: 382 MADQTEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCP 218
MA+QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 217 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNR 98
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQR 100
>08_02_0383 - 16539472-16539633,16543044-16543205
Length = 107
Score = 32.7 bits (71), Expect = 0.12
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 184 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVH 65
+ G+V KMQ+++V+ D L + YNR+ KR H
Sbjct: 4 VVGIVVSNKMQKSVVVAVDRLFHHKMYNRYVKRTSKFMAH 43
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 230 VNVGTLNRLSGSFEA*TNILMVTHVLPLHATFPVQENGGLFLKR 361
++ G L ++SGSF+ T++ + LPL+ V E FL+R
Sbjct: 772 ISEGELKQISGSFKGTTSLRTLLMELPLYRGLEVLELRSFFLER 815
>03_05_0248 +
22348504-22348568,22349064-22349371,22349476-22350039,
22350082-22350128,22351244-22351715,22352349-22352611
Length = 572
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 250 IEGTYIDKKCPFTGNVSIRGRILTGVVQKM-KMQRTIVIRRDYLHYLPKY 104
+ GT PFTG++S G + + KM + +V +DYLH K+
Sbjct: 461 VRGTEDAPITPFTGDMSQSGDAIVAALMKMLAINPHLVTDKDYLHTAMKH 510
>11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591
Length = 573
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 293 VTHVLPLHATFPVQENGGLFLKRFLCL 373
V H +P+H T+ ++ L+L R +CL
Sbjct: 293 VAHFIPVHTTYSGKKLAELYLARIMCL 319
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 27.5 bits (58), Expect = 4.5
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -2
Query: 331 NRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGR 188
N G ++RH ++G E T +DK+ P +G S+ GR
Sbjct: 117 NLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGR 164
>08_02_1393 -
26706198-26706592,26707055-26707301,26707407-26708249,
26708420-26709091
Length = 718
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 261 PERRLRVPTLTRSVPSLVTF 202
PERR VP RS+ LVTF
Sbjct: 155 PERRRNVPVAQRSLEGLVTF 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,958,898
Number of Sequences: 37544
Number of extensions: 245231
Number of successful extensions: 589
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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