Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I13
         (413 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              22   2.4  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   2.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   2.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   4.2  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    21   5.5  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   5.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   5.5  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    20   9.6  

>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -3

Query: 84 TGICPCIWRLAYRDVEIGEIVTIGXCK 4
          + IC C+  L   +++IG    I  C+
Sbjct: 8  SAICVCVGALTLEELQIGLRAVIPVCR 34


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 12  RRSLQSHQSPRPCKQGAKCT 71
           RRS+Q     RPC +  +C+
Sbjct: 43  RRSIQQKIQYRPCTKNQQCS 62


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 12  RRSLQSHQSPRPCKQGAKCT 71
           RRS+Q     RPC +  +C+
Sbjct: 92  RRSIQQKIQYRPCTKNQQCS 111


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -1

Query: 341 RFPEQERWHEEEGHAS 294
           R P +  WH  E H S
Sbjct: 149 RTPTEASWHSPEAHIS 164


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 106 YNRFEKRHRNMSVHLAPCLQGR 41
           YNR+  R R + +  A CL  R
Sbjct: 29  YNRYLTRRRRIEIAHALCLTER 50


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = -3

Query: 84 TGICPCIWRLAYRDVEIGEIVTIGXCK 4
          + IC C+  L   + +IG    +  C+
Sbjct: 8  SAICVCVGALTLEEFQIGLRAVVPICR 34


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 106 YNRFEKRHRNMSVHLAPCLQGR 41
           YNR+  R R + +  A CL  R
Sbjct: 291 YNRYLTRRRRIEIAHALCLTER 312


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 264 VLKPKPTFLW*RMSFLFMP 320
           +LKPKP +   ++S L +P
Sbjct: 40  ILKPKPLWTGKQISSLIIP 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,320
Number of Sequences: 438
Number of extensions: 2121
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)