Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_I12
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 171 5e-44
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 167 1e-42
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 29 0.43
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 4.0
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 26 5.2
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 5.2
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 6.9
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 6.9
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 25 9.1
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 25 9.1
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 171 bits (417), Expect = 5e-44
Identities = 83/159 (52%), Positives = 114/159 (71%)
Frame = -1
Query: 574 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 395
+ I ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQG-NTIKFIVWHGS 61
Query: 394 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 215
+K A +RT S + NMI GVT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+
Sbjct: 62 RKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121
Query: 214 RRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAAXMQ 98
R +K PGVTV S KDE+IIEGNSLE+VS SAA ++
Sbjct: 122 RVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIK 160
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 167 bits (406), Expect = 1e-42
Identities = 81/159 (50%), Positives = 112/159 (70%)
Frame = -1
Query: 574 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 395
+ I ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGS 61
Query: 394 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 215
+K A +R+V S + NMI GVT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+
Sbjct: 62 RKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121
Query: 214 RRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAAXMQ 98
R +K PGVTV S KDE+I+EGNSLE+VS SAA ++
Sbjct: 122 RVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIK 160
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 29.5 bits (63), Expect = 0.43
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = -1
Query: 547 KIPDGLTVHVKSRLVTV---KGP-RGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 380
K+PDG+ + SRL K P L F H +VD+ + L + E WF
Sbjct: 1564 KVPDGIFLKT-SRLPIFEANKAPYNAYLLDFFTHGSVDMLIEQNNLKQSEIWFVLNDFSL 1622
Query: 379 AVRTVCSHVENMIKGVT 329
+ T+CS + N++ VT
Sbjct: 1623 VLATICSCLGNLLNLVT 1639
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +2
Query: 365 DCPHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGPFNCHQT 511
D P+G GS F+ V+H+N N+ ++ +N N H +
Sbjct: 386 DFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHS 434
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 521 MDRKPVWDFDFLICYNLLHVWALFDTRAGKSNSAGRI 631
M+R P+ FDF+ N +H LF G NS ++
Sbjct: 294 MERLPIPPFDFITSLNSIHEGLLF---IGSKNSESKL 327
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/63 (22%), Positives = 35/63 (55%)
Frame = -1
Query: 514 SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKG 335
S+L + + ++ RN + L++ ++VN +E W G + +AV T + ++++ +
Sbjct: 1111 SKLCNLLNDKNIVVRN-QSLSLFHQLVNKYPFLLESWIGLQLVQSAVNTNTADIDDLYRL 1169
Query: 334 VTK 326
++K
Sbjct: 1170 LSK 1172
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.4 bits (53), Expect = 6.9
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 371 PHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGP 493
PH GK S +N E+R A+V+S + PF GP
Sbjct: 127 PHAGKAA-QSAHVMNSTESRPSSAHVSSSYTQKPFAFPLGP 166
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 6.9
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 381 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 491
A SFL+P STF R F+ +S C + LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -3
Query: 608 FRLLCQTKPKHEANCSKSESQNPRRA 531
F +LC + K + C K + +NP A
Sbjct: 25 FLILCMRRNKRQLACMKCQCENPMAA 50
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 85 QDKKTGEQERDLEGLDEMRKQLL 17
Q KT + ERD + L +++QLL
Sbjct: 429 QSVKTNKSERDFDTLSHLQRQLL 451
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,597,886
Number of Sequences: 5004
Number of extensions: 52824
Number of successful extensions: 159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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