Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I12
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    194   6e-50
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   186   1e-47
06_01_1178 + 10131844-10131993,10132103-10132171,10132446-101324...    30   1.8  
01_07_0226 + 42130300-42131430,42131530-42131715,42133244-421333...    28   5.4  
10_06_0110 + 10889414-10889669,10889756-10889806,10890595-108911...    27   9.4  
03_06_0712 - 35683814-35684065,35685296-35685466                       27   9.4  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  194 bits (472), Expect = 6e-50
 Identities = 89/158 (56%), Positives = 124/158 (78%), Gaps = 1/158 (0%)
 Frame = -1

Query: 577 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RLLKVEKWF 401
           MK I+A++ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++   R L+V+ WF
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60

Query: 400 GSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 221
           G+++ +AA+RT  SHV+N+I GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK
Sbjct: 61  GTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEK 120

Query: 220 YIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAA 107
            +R+V M  GVT++ S K KDEL+++GN +E VS SAA
Sbjct: 121 KVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAA 158


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  186 bits (454), Expect = 1e-47
 Identities = 86/151 (56%), Positives = 117/151 (77%), Gaps = 3/151 (1%)
 Frame = -1

Query: 550 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP---RLLKVEKWFGSKKELA 380
           ++IP G+TVHV +++VTV+GPRG L RNFKHL +D +++     R L+V+ WFG+++ +A
Sbjct: 1   MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60

Query: 379 AVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKM 200
           A+RT  SHV+N+I GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M
Sbjct: 61  AIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDM 120

Query: 199 APGVTVVNSPKQKDELIIEGNSLEDVSSSAA 107
             GVT++ S K KDEL+++GN +E VS SAA
Sbjct: 121 LEGVTILRSEKVKDELVLDGNDIELVSRSAA 151


>06_01_1178 +
           10131844-10131993,10132103-10132171,10132446-10132451,
           10132571-10132930,10133983-10134201,10134905-10135054
          Length = 317

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 178 NSPKQKDELIIEGNSLEDVSSSAAXM-QAXXRQDKKTGEQERDLEGLDEMRKQL 20
           N PK KDE+++    +E++  +     +A    +   GE       +DE+R+Q+
Sbjct: 124 NKPKDKDEIVLLREQIEELQKTLLEKEEALKSAESLVGEMNTLYSTVDELRRQV 177


>01_07_0226 +
           42130300-42131430,42131530-42131715,42133244-42133345,
           42133425-42133481,42133563-42133658,42133736-42133828,
           42133945-42134064,42134155-42134187,42134266-42134316,
           42135129-42135191
          Length = 643

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 139 NSLEDVSSSAAXMQAXXRQDKKTGEQERDLEGLDEMRKQLLC 14
           NS+EDV SS+   Q   +  KK  +++R    +DE  + L C
Sbjct: 232 NSIEDVKSSS--QQEISKPKKKKKQKKRQRRKMDESTENLSC 271


>10_06_0110 +
           10889414-10889669,10889756-10889806,10890595-10891163,
           10891178-10891660,10891747-10891944,10893300-10893354,
           10893372-10893631
          Length = 623

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 72  VFLSCRXXACMXAAELETSSKELPSMISSSFCFGELTTVT 191
           +F   R    + A+ ++   + LP+++   FCFG L  V+
Sbjct: 96  IFYQVRCTLQLSASPVDEKPELLPAVLDGGFCFGPLDPVS 135


>03_06_0712 - 35683814-35684065,35685296-35685466
          Length = 140

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = -1

Query: 481 VLKRNF-KHLAVDIRMVNPRLLKVE 410
           VLKR+F +  AVD+R +NP++ K E
Sbjct: 5   VLKRHFSRKRAVDVRRINPKVPKEE 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,049,657
Number of Sequences: 37544
Number of extensions: 349481
Number of successful extensions: 795
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)