Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_I12
(637 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 177 6e-45
SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.59
SB_15785| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82) 28 5.5
SB_44616| Best HMM Match : rve (HMM E-Value=0.012) 28 5.5
SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7) 28 5.5
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 7.3
SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07) 28 7.3
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30) 28 7.3
SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12) 27 9.7
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28) 27 9.7
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 177 bits (431), Expect = 6e-45
Identities = 79/141 (56%), Positives = 105/141 (74%)
Frame = -1
Query: 616 IAFSGSCVKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRM 437
I GSC+ MK I+A++ V IPD + V VKSR+VTV GPRG LKRNF+HL +++
Sbjct: 544 ICLKGSCLSCIVAMKTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTK 603
Query: 436 VNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGN 257
V ++V+ WF S+KELA V+T+ +H+ENMIKGV G++YKMRAVYAHFPIN E
Sbjct: 604 VGKDKVRVDVWFASRKELACVKTIITHIENMIKGVIYGYRYKMRAVYAHFPINIAIQENG 663
Query: 256 SIIEIRNFLGEKYIRRVKMAP 194
+++E+RNFLGEKY+RRV+M P
Sbjct: 664 TLVEVRNFLGEKYVRRVRMRP 684
>SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1808
Score = 31.5 bits (68), Expect = 0.59
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -1
Query: 121 SSSAAXMQAXXRQDKKTGEQERDLEGLDEMRKQLL 17
S + + + RQD TG+Q++ LE LD MRK+LL
Sbjct: 313 SKNISSKHSSSRQDT-TGDQDKALEKLDMMRKKLL 346
>SB_15785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 600
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Frame = -1
Query: 265 EGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAAXMQAXXR 86
E ++++E K I R+ VT+ + K ++ L+ + LED+ + +
Sbjct: 151 EKSTLLEREVNQQNKEIERILSENKVTLADLSKTQENLMKKAKELEDLQQKLLKQEDTAK 210
Query: 85 QDKKTGEQ-----ERDLEGLDEMRKQL 20
QDK+ ++ E++L L E K+L
Sbjct: 211 QDKRRLQEVILTKEKELFKLSEEYKEL 237
>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 416 LQETRVYHANVNSQVFEVPFENSAGPFNCHQ 508
L TR+ + V+S EV E S P++CHQ
Sbjct: 160 LYNTRIPNVTVSSDGGEVELEISDDPYDCHQ 190
>SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 363 QTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVT 506
QT++T A F D RRR F+ +S C + L R+P P++ T
Sbjct: 85 QTMITTA--FPDTRKSPLTRRRNFSDGVSDLSCTENLARSPCAPVSPT 130
>SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)
Length = 883
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -1
Query: 595 VKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRG 482
++ + +K++ + K K DG+ VH K+ TV+ PRG
Sbjct: 98 LQNAKRIKKLEEDLKKKTCDGVLVHRKAVAATVEEPRG 135
>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
Length = 1189
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = -1
Query: 547 KIPDGLTVHVKSRLVTVKGPRG---VLKRNFKHL-AVDIRMVNPRLLKV 413
K+ DGL VH+ ++ V K P+ + KR + L A+ I + +P + KV
Sbjct: 4 KLDDGLRVHIVTQYVLFKNPKKLEIIAKRQKETLEALQINLDHPHVAKV 52
>SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +3
Query: 96 ACMXAAELETSSKELPSMISSSFCFGELTTVTPGAIFTLLMYFSPKKLRISIIEL 260
+ + AAE++TS L + S S C VT IFT MY P+++ ++ L
Sbjct: 230 SAISAAEVKTSRIFLLVINSFSICLAPFMIVTFIEIFTGTMYTVPRQVYLATTNL 284
>SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)
Length = 197
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Frame = +2
Query: 425 TRVYHANVNSQVFEVP-------FENSAGPFNCHQTRFHMDRKP 535
TR YH NV VF V F S G N HQ + DR+P
Sbjct: 57 TRSYHENVVRPVFGVSDYWYRYEFAKSRGQINRHQLSWREDRQP 100
>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1427
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -3
Query: 563 SKSESQNPRRAYGPCEIASGDS*RAPRS--SQKELQTL 456
S+ ++ R Y PC I SG++ APR +KE++ L
Sbjct: 1363 SEDDTTTGARRYRPCPIESGNTYEAPRQVVMEKEVEEL 1400
>SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1080
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/59 (32%), Positives = 24/59 (40%)
Frame = -1
Query: 202 MAPGVTVVNSPKQKDELIIEGNSLEDVSSSAAXMQAXXRQDKKTGEQERDLEGLDEMRK 26
MA T S K E G+ D S A + DK++GE +D G E RK
Sbjct: 370 MASSTTTTTS-KTTLEKGAAGSKTADTSDKATSDNSQKGSDKRSGEASKDGTGAAEKRK 427
>SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)
Length = 309
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 138 LPSMISSSFCFGELTTVTPGAIFTLLMYFSPKKLRISIIE 257
+P I S G+L +T G I T PKKL +IE
Sbjct: 218 IPIAIGSKVNLGQLNILTAGPIITANTSGDPKKLANQVIE 257
>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
Length = 1152
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1
Query: 520 VKSRLVTVKGPRGVLKRNFKHL 455
V++R TV PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090
>SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)
Length = 1290
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -1
Query: 634 MNSAGRIAFSGSCVKQSPNMKQIVAN-QKVKIPDGLTV 524
+ SAG +A + +C PN+K+++ + ++K LTV
Sbjct: 483 VKSAGAVALAEACCTSLPNLKELILSFDEIKKDAALTV 520
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 27.5 bits (58), Expect = 9.7
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Frame = -1
Query: 394 KKELAAVRTVCSHVENMIKGVTKGFQY-KMRAVYAHFPI--NCVTTEGNSIIE-IRNFLG 227
K+ LAA + V + N+ KGVT+G K R V PI V T+G + + + G
Sbjct: 948 KRALAAAKVVKTERVNVAKGVTQGMPVTKGRVVTQGMPITPGRVVTQGKVVTQGMPVTPG 1007
Query: 226 EKYIRRVKMAPGVTVVNS-PKQKDELIIEG 140
+ + + PG V P + ++ +G
Sbjct: 1008 RVVTQGIPVTPGRIVTQGIPVTQGRVVTQG 1037
>SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28)
Length = 998
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -1
Query: 169 KQKDELIIEGNSLEDVSSSAAXMQAXXRQDKKTGEQERDL--EGLDEMRKQLLC 14
K+ + +IE N L + S A ++ Q K EQE + + L E+ +QL C
Sbjct: 830 KELESYVIEYNVLREEDLSLASVEEFEHQRAKKLEQENKVLSKHLQEVSEQLTC 883
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,893,014
Number of Sequences: 59808
Number of extensions: 409911
Number of successful extensions: 1061
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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