Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_I12
(637 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal pro... 195 2e-50
U10401-7|AAA19056.1| 504|Caenorhabditis elegans Hypothetical pr... 31 0.69
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical... 31 0.69
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 31 0.91
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 31 0.91
AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein. 29 3.7
AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (droso... 29 3.7
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso... 29 3.7
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso... 29 3.7
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso... 29 3.7
AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein. 29 3.7
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ... 28 6.4
Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical pr... 27 8.5
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr... 27 8.5
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr... 27 8.5
>AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 9 protein.
Length = 189
Score = 195 bits (476), Expect = 2e-50
Identities = 87/160 (54%), Positives = 119/160 (74%)
Frame = -1
Query: 577 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 398
MK I +N V P+G+T VK+R+V V GPRG ++++F+HL +++ + L+V KWFG
Sbjct: 1 MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60
Query: 397 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKY 218
+KELAA+RTVCSH++NMIKGVT GF+YKMR+VYAHFPIN +GN +EIRNFLGEK
Sbjct: 61 VRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKI 120
Query: 217 IRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAAXMQ 98
+RRV + GV S QKDE+++EGN ++ VS +AA +Q
Sbjct: 121 VRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQ 160
>U10401-7|AAA19056.1| 504|Caenorhabditis elegans Hypothetical
protein T20B12.3 protein.
Length = 504
Score = 31.1 bits (67), Expect = 0.69
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 327 LVTPLIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 464
L P +++ + ++++LT SFL H T+ F R+S +CL
Sbjct: 275 LTNPSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318
>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
protein Y47G6A.29 protein.
Length = 2460
Score = 31.1 bits (67), Expect = 0.69
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Frame = -1
Query: 460 HLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVC---SHVENMIKGVT--KGFQYKMRAVY 296
H+ D++++ + ++ WF ++L ++RT C S ++ I +T KGF + M+A +
Sbjct: 361 HVKHDVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEKGFYWNMKAEF 420
Query: 295 AHF 287
+F
Sbjct: 421 LNF 423
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 30.7 bits (66), Expect = 0.91
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = -1
Query: 205 KMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAAXMQAXXRQDKKTGEQERDLEGLDEMRK 26
K A + ++ K++++L E + LED + +A Q + K +E E +DE K
Sbjct: 13579 KKAAEIALIEIQKEQEKLAQEQSRLEDEAKKSAEKQKLESETKSKQTEEAPKESVDEKPK 13638
Query: 25 Q 23
+
Sbjct: 13639 K 13639
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 30.7 bits (66), Expect = 0.91
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = -1
Query: 205 KMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAAXMQAXXRQDKKTGEQERDLEGLDEMRK 26
K A + ++ K++++L E + LED + +A Q + K +E E +DE K
Sbjct: 13579 KKAAEIALIEIQKEQEKLAQEQSRLEDEAKKSAEKQKLESETKSKQTEEAPKESVDEKPK 13638
Query: 25 Q 23
+
Sbjct: 13639 K 13639
>AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.
Length = 4250
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -1
Query: 628 SAGRIAFSGSCVKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPR 485
S G+IA S +P + Q + + I +G ++H++ R+ + PR
Sbjct: 3167 SVGKIAVESSTQIDAPQVVQQLVDSVENILEGDSIHLECRVTPINDPR 3214
>AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform b protein.
Length = 4203
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -1
Query: 628 SAGRIAFSGSCVKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPR 485
S G+IA S +P + Q + + I +G ++H++ R+ + PR
Sbjct: 3084 SVGKIAVESSTQIDAPQVVQQLVDSVENILEGDSIHLECRVTPINDPR 3131
>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform a protein.
Length = 4488
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -1
Query: 628 SAGRIAFSGSCVKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPR 485
S G+IA S +P + Q + + I +G ++H++ R+ + PR
Sbjct: 3405 SVGKIAVESSTQIDAPQVVQQLVDSVENILEGDSIHLECRVTPINDPR 3452
>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform d protein.
Length = 4369
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -1
Query: 628 SAGRIAFSGSCVKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPR 485
S G+IA S +P + Q + + I +G ++H++ R+ + PR
Sbjct: 3405 SVGKIAVESSTQIDAPQVVQQLVDSVENILEGDSIHLECRVTPINDPR 3452
>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform c protein.
Length = 4447
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -1
Query: 628 SAGRIAFSGSCVKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPR 485
S G+IA S +P + Q + + I +G ++H++ R+ + PR
Sbjct: 3405 SVGKIAVESSTQIDAPQVVQQLVDSVENILEGDSIHLECRVTPINDPR 3452
>AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.
Length = 4219
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -1
Query: 628 SAGRIAFSGSCVKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPR 485
S G+IA S +P + Q + + I +G ++H++ R+ + PR
Sbjct: 3100 SVGKIAVESSTQIDAPQVVQQLVDSVENILEGDSIHLECRVTPINDPR 3147
>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
protein D1007.15 protein.
Length = 1184
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = -1
Query: 334 VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 197
++ F Y + +++ FPI C+ + I+ + +G Y+R V ++
Sbjct: 1085 LSSSFVYGLSSLWYEFPIKCLLWDAAVIVCLITQIGYSYLRGVHLS 1130
>Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical
protein T01H3.2 protein.
Length = 980
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 194 RCHLYPSDVFLTQEVTYLNN*ITLSGD-TVNGEVSIHSTHLVLEAF 328
RC L ++F + +T LNN + + GD +++ + S VL F
Sbjct: 477 RCQLMQGELFRSVNITILNNNLQIYGDNSLSKSIDTSSIKSVLPCF 522
>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
protein M110.4b protein.
Length = 1155
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 449 NSQVFEVPFENSAGPFNCHQTRFHMDR 529
+SQ F +PF N++GP N + R M++
Sbjct: 26 SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52
>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
protein M110.4a protein.
Length = 1156
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 449 NSQVFEVPFENSAGPFNCHQTRFHMDR 529
+SQ F +PF N++GP N + R M++
Sbjct: 26 SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,606,395
Number of Sequences: 27780
Number of extensions: 307587
Number of successful extensions: 796
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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