Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_I12
(637 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos... 179 2e-45
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim... 176 1e-44
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil... 176 1e-44
At1g05190.1 68414.m00523 ribosomal protein L6 family protein Sim... 40 0.002
At2g38330.1 68415.m04709 MATE efflux family protein low similari... 29 2.0
At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6)... 29 3.4
At3g06760.1 68416.m00801 drought-responsive family protein simil... 28 6.0
At2g19500.1 68415.m02279 FAD-binding domain-containing protein /... 28 6.0
At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenas... 27 7.9
>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
ribosomal protein L9, cytosolic - garden pea,
PIR2:S19978
Length = 194
Score = 179 bits (435), Expect = 2e-45
Identities = 85/173 (49%), Positives = 119/173 (68%), Gaps = 5/173 (2%)
Frame = -1
Query: 577 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKV 413
MK I++++ + IPDG+ + V ++++ V+GPRG L R+FKHL +D +++ R LK+
Sbjct: 1 MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60
Query: 412 EKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNF 233
+ WFGS+K A++RT SHV+N+I GVT+GF Y+MR VYAHFPIN N IEIRNF
Sbjct: 61 DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120
Query: 232 LGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAAXMQAXXRQDKK 74
LGEK +R+V+M GV +V S K KDE+I+EGN +E VS S A + KK
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKK 173
>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
[Arabidopsis thaliana]
Length = 194
Score = 176 bits (428), Expect = 1e-44
Identities = 82/173 (47%), Positives = 120/173 (69%), Gaps = 5/173 (2%)
Frame = -1
Query: 577 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKV 413
MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++ + LK+
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 412 EKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNF 233
+ WFG++K A++RT SHV+N+I GVT+GF+YKMR VYAHFPIN IEIRNF
Sbjct: 61 DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120
Query: 232 LGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAAXMQAXXRQDKK 74
LGEK +R+V+M GVT+V S K KDE++++GN +E VS S A + KK
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKK 173
>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
thaliana]
Length = 194
Score = 176 bits (428), Expect = 1e-44
Identities = 82/173 (47%), Positives = 120/173 (69%), Gaps = 5/173 (2%)
Frame = -1
Query: 577 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKV 413
MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++ + LK+
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 412 EKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNF 233
+ WFG++K A++RT SHV+N+I GVT+GF+YKMR VYAHFPIN IEIRNF
Sbjct: 61 DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120
Query: 232 LGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAAXMQAXXRQDKK 74
LGEK +R+V+M GVT+V S K KDE++++GN +E VS S A + KK
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKK 173
>At1g05190.1 68414.m00523 ribosomal protein L6 family protein
Similar to Mycobacterium RlpF (gb|Z84395). ESTs
gb|T75785,gb|R30580,gb|T04698 come from this gene
Length = 223
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/86 (24%), Positives = 44/86 (51%)
Frame = -1
Query: 565 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 386
+ Q + +P +T+ ++ + + VKGP G L + V++ L+V+K +++
Sbjct: 46 IGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPR-EVELTKEESGFLRVKKTVETRRA 104
Query: 385 LAAVRTVCSHVENMIKGVTKGFQYKM 308
+ +NM+ GV+KGF+ K+
Sbjct: 105 NQMHGLFRTLTDNMVVGVSKGFEKKL 130
>At2g38330.1 68415.m04709 MATE efflux family protein low similarity
to enhanced disease susceptibility 5 [Arabidopsis
thaliana] GI:16589070; contains Pfam profile PF01554:
Uncharacterized membrane protein family
Length = 521
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -3
Query: 635 NEFGRPNCFFR--LLCQTKPKHEANCSKSESQNPRRAYGP 522
+ FG PN R ++C++ P+ E+ + SQ P + P
Sbjct: 17 SRFGNPNSSIRRTIVCKSSPRDESPAVSTSSQRPEKQQNP 56
>At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6) /
caspase family protein similar to latex-abundant protein
[Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
PF00656: ICE-like protease (caspase) p20 domain
Length = 410
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/64 (21%), Positives = 32/64 (50%)
Frame = -1
Query: 604 GSCVKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPR 425
G + + K +++K+ DG VHV ++ + ++ +LK+N + +++ + P
Sbjct: 188 GIAIPHHKDEKDENKTKELKLEDGAKVHVVNKSLPLQTLIDILKQNTGNNDIEVGKIRPT 247
Query: 424 LLKV 413
L V
Sbjct: 248 LFNV 251
>At3g06760.1 68416.m00801 drought-responsive family protein similar
to drought-induced mRNA, Di19 [Arabidopsis thaliana]
gi|469110|emb|CAA55321
Length = 217
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 121 SSSAAXMQAXXRQDKKTGEQERDLEGLDEMRKQLLC 14
SSS++ + R D G DLEG D+++ + +C
Sbjct: 14 SSSSSSRRCQSRSDLYLGGGYEDLEGEDDLKAEFIC 49
>At2g19500.1 68415.m02279 FAD-binding domain-containing protein /
cytokinin oxidase family protein similar to cytokinin
oxidase, Zea mays [SP|Q9T0N8] [gi:3441978]
Length = 501
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = +3
Query: 141 PSMISS-SFCFGELTTVTPGAI 203
PS+IS+ S FG +TTVTPG +
Sbjct: 39 PSIISAASHDFGNITTVTPGGV 60
>At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenase
B, chloroplast (GAPB) / NADP-dependent
glyceraldehydephosphate dehydrogenase subunit B
identical to SP|P25857 Glyceraldehyde 3-phosphate
dehydrogenase B, chloroplast precursor (EC 1.2.1.13)
(NADP-dependent glyceraldehydephosphate dehydrogenase
subunit B) {Arabidopsis thaliana}
Length = 447
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = -1
Query: 634 MNSAGRIAFSGSCVKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHL 455
+N +G + + +K + A +VKI D T+ V +L+ V R LK + L
Sbjct: 113 LNDSGGVKNASHLLKYDSMLGTFKA--EVKIVDNETISVDGKLIKVVSNRDPLKLPWAEL 170
Query: 454 AVDI 443
+DI
Sbjct: 171 GIDI 174
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,800,932
Number of Sequences: 28952
Number of extensions: 283910
Number of successful extensions: 739
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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