Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I11
         (784 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4Z406 Cluster: Putative uncharacterized protein; n=4; ...    34   3.5  
UniRef50_P50748 Cluster: Kinetochore-associated protein 1; n=18;...    33   6.1  
UniRef50_A0EF46 Cluster: Chromosome undetermined scaffold_92, wh...    33   8.1  

>UniRef50_Q4Z406 Cluster: Putative uncharacterized protein; n=4;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 1076

 Score = 34.3 bits (75), Expect = 3.5
 Identities = 22/57 (38%), Positives = 32/57 (56%)
 Frame = +1

Query: 127 ITNYNVVIIANIILRKVIPTNKKISAINIYDLILEMKYIRINEAINMWIFITYIDSI 297
           I+N N +++ N+   KVI  NK    +NI +L+ + K    N+ IN  I I YI SI
Sbjct: 49  ISNINDLVVDNMNELKVIQDNKYKEILNIIELVKKKKK---NQKINSVILIIYIISI 102


>UniRef50_P50748 Cluster: Kinetochore-associated protein 1; n=18;
            Tetrapoda|Rep: Kinetochore-associated protein 1 - Homo
            sapiens (Human)
          Length = 2209

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 23/100 (23%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
 Frame = +1

Query: 160  IILRKVIPTNKKISAINIYDLILEMKYIRINEAINMWIFITYIDSIEF*LNLPSFLFNKV 339
            ++L+ +   ++KI+ INI   +  +K+++    I+  + + Y   +E  + LPS    ++
Sbjct: 1532 VVLKVIERADEKITNININQALSILKHLKSYRRISPPVDLEYQYMLEHVITLPSAAQTRL 1591

Query: 340  TIRISFFGSS----FILA*SYTKYSYTNILLV*SRSLFEL 447
               + FFG++     IL+   ++ S+  +LL+     F L
Sbjct: 1592 PFHLIFFGTAQNFWKILSTELSEESFPTLLLISKLMKFSL 1631


>UniRef50_A0EF46 Cluster: Chromosome undetermined scaffold_92, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_92, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 2467

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 744  LDSKRCSLCYTNQTNVIYPLAFVCSALRFYLHVNGI 637
            + SK C  C ++Q   +  L F C  L+ Y+ +NGI
Sbjct: 1257 ITSKNCKSCDSDQFRELNLLTFTCDCLQGYIEINGI 1292


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 612,728,659
Number of Sequences: 1657284
Number of extensions: 10594403
Number of successful extensions: 23609
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23601
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66262109095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)