Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I11
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74041-1|CAA98520.1|  255|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z68009-5|CAA92007.1|  208|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>Z74041-1|CAA98520.1|  255|Caenorhabditis elegans Hypothetical
           protein T03F7.5 protein.
          Length = 255

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = -3

Query: 395 FVYDYAKMKLEPKKLMRIVTL-LKRKEGRFN*NSMESMYVIKIHIFIASLIRIYFISNIK 219
           F+Y YAK     K    + T  LKRK    N  +  + ++I I + I  L   Y I+  +
Sbjct: 119 FIY-YAKRISSSKYKANVTTYSLKRKHNVSNVLNKNNFFMILILVLILQLYNFYEIA--R 175

Query: 218 S*ILIALIFLFVGITLRNIIFAMMTT 141
           S +    I++F  +T   I++    T
Sbjct: 176 SFLYSTAIYMFAQLTCFCILWGAAVT 201


>Z68009-5|CAA92007.1|  208|Caenorhabditis elegans Hypothetical
           protein R09A8.5 protein.
          Length = 208

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 702 NVIYPLAFVCSALRFYLHVNGITGFFFINKYKIL 601
           NV    + +CS +   L   GI  FFFI+ +K++
Sbjct: 19  NVSMKKSILCSVMFLLLFAAGIAQFFFIDHFKLV 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,655,225
Number of Sequences: 27780
Number of extensions: 272309
Number of successful extensions: 635
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)