Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I11
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   4.2  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   4.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   7.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.8  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/26 (30%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = -2

Query: 705 TNVIYPLAFVCSALRF---YLHVNGI 637
           + +++P+ FVC  L +   YLH++ +
Sbjct: 408 SRIVFPVCFVCFNLMYWIIYLHISDV 433


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/26 (30%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = -2

Query: 705 TNVIYPLAFVCSALRF---YLHVNGI 637
           + +++P+ FVC  L +   YLH++ +
Sbjct: 408 SRIVFPVCFVCFNLMYWIIYLHISDV 433


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 129 DYGHTKNYP 103
           +Y HTKNYP
Sbjct: 62  EYDHTKNYP 70


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 129 DYGHTKNYP 103
           +Y HTKNYP
Sbjct: 59  EYDHTKNYP 67


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 139 NVVIIANIILRKVIPTNKKISAINI 213
           N+ +I N  + KV   NK+ + +N+
Sbjct: 278 NLHVIVNATVTKVRTLNKRATGVNV 302


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 150 DDYIIVSDYGHTKNYP 103
           D  I   ++ HTKNYP
Sbjct: 57  DAAIKSGEFDHTKNYP 72


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 5/18 (27%), Positives = 13/18 (72%)
 Frame = -2

Query: 705 TNVIYPLAFVCSALRFYL 652
           + +++P+ FVC  L +++
Sbjct: 346 SRIVFPVCFVCFNLMYWI 363


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,578
Number of Sequences: 438
Number of extensions: 3464
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)