Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_I10
(398 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0744 + 5687269-5687365,5687466-5687689,5688307-5688354,568... 48 3e-06
03_06_0379 + 33505242-33505347,33505474-33505631,33506127-335061... 43 8e-05
08_01_0907 + 8949102-8949160,8949662-8949842,8951816-8951941,895... 39 0.002
06_03_0540 - 21923763-21923945,21924027-21924776,21924895-219253... 32 0.15
03_06_0102 + 31656268-31656304,31656625-31656920,31657967-31658080 28 3.1
05_06_0025 + 25018426-25018596,25018692-25018892,25018983-250192... 27 4.1
07_03_1525 + 27448257-27448582,27450741-27450973,27451280-274529... 27 7.2
01_03_0131 - 12858377-12858664,12859585-12859975,12863357-128633... 26 9.5
01_01_0604 - 4493868-4494028,4494538-4494746,4495860-4496003,449... 26 9.5
>07_01_0744 +
5687269-5687365,5687466-5687689,5688307-5688354,
5689057-5689125
Length = 145
Score = 48.0 bits (109), Expect = 3e-06
Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = -2
Query: 208 SGFNKYGLLRDDCL--HETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKE 44
S KYGL DD + D+ EAL RLP VVD RN R+ RA+ LSM+ LP +
Sbjct: 27 SRLRKYGLRYDDLYDPYHDLDIKEALARLPREVVDARNQRLKRAMDLSMKHQYLPAD 83
>03_06_0379 +
33505242-33505347,33505474-33505631,33506127-33506174,
33506851-33506919
Length = 126
Score = 43.2 bits (97), Expect = 8e-05
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Frame = -2
Query: 208 SGFNKYGLLRDDCL---HETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEE 41
S KYGL DD H+ D+ EAL RLP VVD R+ R+ RA+ LSM+ L + +
Sbjct: 30 SRLRKYGLRYDDLYDPKHDL-DIKEALERLPREVVDARHQRLKRAMDLSMKHQYLSEND 87
>08_01_0907 +
8949102-8949160,8949662-8949842,8951816-8951941,
8952082-8952092,8952237-8952360,8952447-8952546,
8952807-8952849,8953033-8953153
Length = 254
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = -2
Query: 196 KYGLLRDDCLHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEE 41
+Y L D + D+ EAL RLP VVD N R+ R + LS + LP +E
Sbjct: 28 RYDDLFDAYQYHGLDIKEALARLPREVVDAHNQRLKRTMDLSTKHQYLPADE 79
>06_03_0540 -
21923763-21923945,21924027-21924776,21924895-21925323,
21925509-21925619,21925715-21926040,21926130-21926251,
21926905-21927020,21927119-21927243,21927338-21927596
Length = 806
Score = 32.3 bits (70), Expect = 0.15
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 196 KYGLLRDDCLHETPDVTEALRR---LPSHVVDERNFRIVRAIQLSMQKTILPKEEWTKYE 26
K +L +C E V +AL R L V DE+ + ++ M KT+ +E ++K++
Sbjct: 353 KIKVLSSECTEEAKKVQDALHREELLKQKVADEKTRHLEAVTEVEMAKTLFAQEAFSKHK 412
Query: 25 ED 20
+
Sbjct: 413 AE 414
>03_06_0102 + 31656268-31656304,31656625-31656920,31657967-31658080
Length = 148
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -2
Query: 208 SGFNKYGLLRDDCLHETPDVTEALRRLPSHVVDERNFRIVRAI-QLSMQKTILPKEE 41
SG++K G+ +H TP EAL R+ + R R + + +LS+ I PK++
Sbjct: 46 SGYDKAGMDSGKYVHYTPGQVEALERVYAECPKPRFSRRQQLLCELSILANIEPKQK 102
>05_06_0025 +
25018426-25018596,25018692-25018892,25018983-25019236,
25019468-25019540,25019659-25019715,25020219-25020298,
25020386-25020448,25020678-25020765,25021055-25021156,
25021296-25021369,25021690-25021754,25021933-25022096,
25022179-25022246,25022337-25022397,25022729-25022766,
25023154-25023329,25023747-25023859,25023944-25023955
Length = 619
Score = 27.5 bits (58), Expect = 4.1
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Frame = -2
Query: 208 SGF-NKYGLLRDDCLH------ETPDVTEALRRLPSHVVDER 104
+GF N YGL RDD E D+ ALR P H+V E+
Sbjct: 320 NGFINYYGLQRDDIREMREHYKEHGDIDMALRNFPRHLVAEK 361
>07_03_1525 +
27448257-27448582,27450741-27450973,27451280-27452919,
27453129-27453575
Length = 881
Score = 26.6 bits (56), Expect = 7.2
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Frame = -2
Query: 187 LLRDDCLHETPDVTE--------ALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEWTK 32
LLR+ CLH P++TE LR + ++D + I LS Q L EE+++
Sbjct: 707 LLRNMCLHAQPELTELDLKELSQTLREVLERIMDAEGAELEILIGLSSQICKLIPEEFSQ 766
Query: 31 YEE 23
E
Sbjct: 767 QLE 769
>01_03_0131 -
12858377-12858664,12859585-12859975,12863357-12863397,
12864745-12865419
Length = 464
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 184 LRDDCLHETPDVTEALRRLPSHVVD 110
L DC D EA+R+L HV+D
Sbjct: 234 LESDCRQVVNDYVEAVRQLACHVLD 258
>01_01_0604 -
4493868-4494028,4494538-4494746,4495860-4496003,
4496298-4496539
Length = 251
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 121 GMEVCGVLQLHQEFHASNHPVTNHIY*IPKDCRP 222
G+ CG+LQ + A+ +P T + I DC P
Sbjct: 129 GIPECGLLQTCLDELATRYPATKFVKIISTDCIP 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,384,002
Number of Sequences: 37544
Number of extensions: 188815
Number of successful extensions: 545
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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