Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I10
         (398 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58699| Best HMM Match : UCR_14kD (HMM E-Value=3.6e-37)              67   4e-12
SB_3002| Best HMM Match : Pkinase (HMM E-Value=4.1e-17)                31   0.35 
SB_54614| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-38)         29   1.1  
SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32)                 27   4.3  
SB_28421| Best HMM Match : Oxysterol_BP (HMM E-Value=4.5e-11)          27   4.3  
SB_56676| Best HMM Match : Peptidase_C1 (HMM E-Value=0.0027)           27   7.4  
SB_25787| Best HMM Match : Asparaginase_2 (HMM E-Value=0.097)          27   7.4  
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  

>SB_58699| Best HMM Match : UCR_14kD (HMM E-Value=3.6e-37)
          Length = 116

 Score = 67.3 bits (157), Expect = 4e-12
 Identities = 33/74 (44%), Positives = 45/74 (60%)
 Frame = -2

Query: 241 SDSLSKWAYNLSGFNKYGLLRDDCLHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQK 62
           S +  +W     G+ + GL R+D + E  DV EA+RR+P    + RNFRIVRAI  +M+ 
Sbjct: 19  SAAFREWYIYACGYRQIGLKREDLIIEDSDVAEAVRRIPEEERNLRNFRIVRAIDTTMKM 78

Query: 61  TILPKEEWTKYEED 20
             LP+E WTK  ED
Sbjct: 79  KWLPEELWTKPSED 92


>SB_3002| Best HMM Match : Pkinase (HMM E-Value=4.1e-17)
          Length = 683

 Score = 31.1 bits (67), Expect = 0.35
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -2

Query: 187 LLRDDCLHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEWTKYE 26
           LL +  LH+ PD  +AL +   + + +  FRI +A+  S +K I  +  +  Y+
Sbjct: 343 LLAEPALHKDPDTIKALWKATVNELGDLEFRIQQAMTSSSKKPIAEEYSFLVYD 396


>SB_54614| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-38)
          Length = 1935

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -2

Query: 178  DDCLHETPDVTEALRRLPS--HVVDERNFRIVRAIQLSMQ-KTILPKEEWTKYEED 20
            DDCLH TP   EA+R       ++    FR+ + +  S +  + LP+ E T   +D
Sbjct: 1166 DDCLHSTPTEAEAVRLATDLRELLARGGFRLTKFVSNSKELLSSLPESERTTSVKD 1221


>SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32)
          Length = 991

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/58 (18%), Positives = 28/58 (48%)
 Frame = -2

Query: 187 LLRDDCLHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEWTKYEEDXR 14
           ++ +D +   P+ T+A++  P H      F+    I   +++ +  +++W  Y+   R
Sbjct: 510 VISEDGVEADPEKTKAIQDFPDHCDRAPTFQWYATINEPLRQLLKKEQQWLWYQPQER 567


>SB_28421| Best HMM Match : Oxysterol_BP (HMM E-Value=4.5e-11)
          Length = 378

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 99  KFLSSTTWDGSLRSASVTSGVSCKQSSRNKP 191
           +++   +WD SL      +GV+C    RN+P
Sbjct: 223 RYVIEGSWDKSLECIPQDTGVTCPTDCRNRP 253


>SB_56676| Best HMM Match : Peptidase_C1 (HMM E-Value=0.0027)
          Length = 295

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 64  FAWRAVWHVQYGSFSRQQHGMEVCGVLQLH 153
           F WR V    Y S +R QH  + CG    H
Sbjct: 55  FDWRDVNGTNYASTTRNQHIPQYCGSCWAH 84


>SB_25787| Best HMM Match : Asparaginase_2 (HMM E-Value=0.097)
          Length = 1623

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 221  PFAEAVTSVNSRGSESHHGSC 283
            PF  A+T V+ RG++S  G C
Sbjct: 1130 PFRRAITCVSRRGNQSPTGGC 1150


>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = -2

Query: 223 WAYNLSGFNKYGLLRDDCLHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKE 44
           WA N  G   Y +++        DVT +L  +  H   E+ F++ ++  +S+    +PK 
Sbjct: 398 WAQNWDGI--YDMVQPYPDATPLDVTPSL--IKQHYTPEKMFKLAQSFFVSIGLDPMPKS 453

Query: 43  EWTK 32
            W K
Sbjct: 454 FWNK 457


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,228,470
Number of Sequences: 59808
Number of extensions: 231908
Number of successful extensions: 700
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)