Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I09
         (451 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)                 30   1.0  
SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11)                 29   2.3  
SB_18894| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.1  
SB_43150| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_14825| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_23139| Best HMM Match : Flotillin (HMM E-Value=0.11)                27   5.4  
SB_36114| Best HMM Match : Spectrin (HMM E-Value=0.034)                27   5.4  
SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012)                    27   7.2  
SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058)               27   7.2  
SB_56992| Best HMM Match : Copper-bind (HMM E-Value=0.82)              27   9.5  

>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +3

Query: 72  VLSLHCSSTLWASDLLTPGGSFASATSMFNVPSEFKIADLLK 197
           VLS++C++ L      TPG    S   ++++P EF  ADL++
Sbjct: 207 VLSVYCAAVLLKESHYTPGPD-GSNLFIYHLPQEFTDADLMQ 247


>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
          Length = 362

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +3

Query: 72  VLSLHCSSTLWASDLLTPGGSFASATSMFNVPSEFKIADLLK 197
           VLS++C++ L      TPG    S   ++++P EF  ADL++
Sbjct: 255 VLSVYCAAVLLKESHYTPGPD-GSNLFIYHLPQEFTDADLMQ 295


>SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11)
          Length = 1477

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 238  YSEDKAFK-KFVLCFFNKSAILNSDGTLNMDVALAKLPPGVNKSEAQSV 95
            Y+ D  F    ++    +S +++ DG+ N+ VA+A LP G   +  + V
Sbjct: 1240 YTNDACFNGSLIIPLAIRSGLMDMDGSENLTVAVADLPQGYQLNSFREV 1288


>SB_18894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = +3

Query: 123 PGGSFASATSMFNVPSEFKIADLLKKQSTNFLKALSSEYCPVFAAFITSVLTPDSLTH 296
           PGGS A +T +F V   F          T+FLK +     P    FIT+V    S+ H
Sbjct: 455 PGGSAAEST-VFQVLDAFLGIRHHSPSRTSFLKLMRKHMPPKHNEFITAVENGPSVRH 511


>SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 621

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = -1

Query: 349 NVHLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSE 230
           N HL     E+   ++ +C+K + + ++ ++  KTG+  E
Sbjct: 253 NAHLVHADSEQDGIFSDKCIKLAHMHSDAVDFPKTGECPE 292


>SB_43150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 616

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -1

Query: 322 EKAKQYTSECVKESGVSTEVINAAKTGQYSEDKAFKKFV-LCFFNKSAILNSDGTLNMDV 146
           EK      + VK SG++  V   +K G+YS  +AF   + L     S +L +D  L M  
Sbjct: 447 EKHDLDLEDAVKTSGIAEIVKTVSKPGKYSRREAFNVAINLVTDPNSIVLLTDLHLEMTS 506

Query: 145 ALAK 134
            L K
Sbjct: 507 LLLK 510


>SB_14825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 90

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 286 ESGVSTEVINAAKTGQYSEDK-AFKKFVLCFFNKSAILNSDGTLNMDVALAKLPPG 122
           + G + +VI+  K+ +       F K++     K A+LN  G L +D  L +LP G
Sbjct: 25  KDGAAQDVIDYIKSDKPDLTVYTFCKYLKTIKRKDAVLNLKGELTVDKHLVELPSG 80


>SB_23139| Best HMM Match : Flotillin (HMM E-Value=0.11)
          Length = 1166

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 57   AASCPVLSLHCSSTLWASDLLTPGGSFASATSMFN 161
            A+S PVL   C    W S  + PGG F  + SM +
Sbjct: 1034 ASSIPVLQGGCEQA-WESYAILPGGQFFRSLSMLH 1067


>SB_36114| Best HMM Match : Spectrin (HMM E-Value=0.034)
          Length = 352

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 343 HLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKA 221
           H  +T+K+   + + E  K S V T+  NAAKTG   E  A
Sbjct: 190 HSPKTRKKFEARLSEEEGKVSHVRTQYENAAKTGMLDEATA 230


>SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012)
          Length = 1551

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 361  CGADNVHLTETQKEKAKQYTSECVKESGVS 272
            C   +V +TE+Q  ++K + +E  K  G+S
Sbjct: 1110 CSYPSVSITESQANQSKSFPTEYTKAQGIS 1139


>SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058)
          Length = 1002

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
 Frame = -1

Query: 394 VLICLAFAVFNCGADNVHLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKAFK 215
           +L+ L  A   C    V L+E   E+ K+   + +KE       ++   T +  + K  +
Sbjct: 632 MLVSLVEAEEKC-IQRVRLSE---EEVKEILQQRIKEEAAPQLSVSVYDTERNEKAKLHR 687

Query: 214 KFVLCFFNKSAILNSDGTLN-MDVALAKL--PPGVNKSEAQSVLEQCKDKTGQDAADKA 47
           + +     + A+   +  L+ +   LA++  PP +++ EA  + E+C     Q   DKA
Sbjct: 688 QELERKMQEEAMKKHETELDYLAPFLAQIGDPPRISRQEAYKLKEECLQDLKQRLIDKA 746


>SB_56992| Best HMM Match : Copper-bind (HMM E-Value=0.82)
          Length = 1642

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -1

Query: 352  DNVHLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKAFKKFVLCFFNKSA 182
            DN+    T+  +A +  SE V      T+V+NA    Q  E+K   K  +  F +SA
Sbjct: 1336 DNIKAGATRHVQASKLQSEDVANFDKQTKVVNAVVHRQ-PENKLQNKHFIAIFAESA 1391


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,076,580
Number of Sequences: 59808
Number of extensions: 222486
Number of successful extensions: 656
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)