Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I06
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    29   0.70 
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    27   2.1  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    27   2.1  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    26   4.9  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    25   8.6  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    25   8.6  

>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 40  HPSRSSSTSGXQFLPSSGCRLLVINNTTSTIHQIPSP 150
           HPSR +S S   F  S+   L   N+T + +H + SP
Sbjct: 149 HPSRKASRSLRLFESSTSNNLETGNSTNTALHNVSSP 185


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 40  HPSRSSS-TSGXQFLPSSGCRLLVINNTTSTIHQIPSPPRVKSFPTAVP 183
           +P  S S T+       SG   LV   T  T+H     P   SFP+A+P
Sbjct: 8   NPFESGSVTASDVAAAKSGAEDLVNTLTAHTVHPSTELPSATSFPSALP 56


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 336 FALNFSFLNLIISDTSKFDATMACGLPGGVI 428
           F++N S   +I    S  D T+ACG  GG++
Sbjct: 118 FSINESPYPIIAVSQSPIDKTIACGFGGGLV 148


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 321 NSIQGFALNFSFLNLIISDTSKFDATMACGLPGGVIPFMVD 443
           N+ +GF L  S      SD  K  ++    LP   IPF VD
Sbjct: 104 NTSKGFHLQSSDKKYADSDRPKLSSSSLLSLPDQKIPFPVD 144


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 34  LFHPSRSSSTSGXQFLPSSGCRLLVINNTTSTIHQIPSPPRVK 162
           LF P++    +  Q LPS   +L  I    +T+H +    +VK
Sbjct: 674 LFPPNQGYDRARNQKLPSKDPQLFTIEEAFTTVHHLVRLYKVK 716


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 92  PEDGRNWXPDVEEDLDGWKSSKNEIDSL 9
           PE+G NW    ++    WK+ K+  D L
Sbjct: 476 PEEGHNWKVPADKTHPLWKNRKDFRDKL 503


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,122,860
Number of Sequences: 5004
Number of extensions: 64146
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)