Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I06
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)             113   1e-25
SB_35368| Best HMM Match : UIM (HMM E-Value=6.3e-06)                   30   2.3  
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_14362| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.065)             29   4.0  
SB_17059| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-34)                 29   5.3  
SB_15694| Best HMM Match : RNA_POL_M_15KD (HMM E-Value=2.9)            28   7.0  
SB_25685| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              28   9.2  
SB_36059| Best HMM Match : TolA (HMM E-Value=0.1)                      28   9.2  

>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
          Length = 1168

 Score =  113 bits (273), Expect = 1e-25
 Identities = 47/86 (54%), Positives = 62/86 (72%)
 Frame = -1

Query: 512 YRPLGPLVKCSYLPLEFLDCDEPIDHKGNHTARQATGHGCVKFGGVRYDQVEKAKVQCKA 333
           + P GPLV C YLPL+FLDC++P+D KGN +A++  G+GCVKFGG RYD+VE+ +V C  
Sbjct: 45  FDPRGPLVDCQYLPLDFLDCEQPLDLKGNSSAKKEQGYGCVKFGGSRYDEVERTRVWCTV 104

Query: 332 LDGIECYGSRSFPRDGFPCVRYSGHY 255
           LDGIECYG R F  +  P   ++  Y
Sbjct: 105 LDGIECYGERRFLAEKCPVSSHALEY 130


>SB_35368| Best HMM Match : UIM (HMM E-Value=6.3e-06)
          Length = 362

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 359 EKAKVQCKALDGIECYGSRSFPRDGFPCVRY 267
           ++  V CKALD ++C G R+F +  F C RY
Sbjct: 72  KEVSVSCKALDFVDCKGPRNFTKT-FSC-RY 100


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -2

Query: 448  NLSTIKGITPPGKPQAMVASNLEVSDMIKLRKLKFSAKPWMELNVMAVE 302
            N++  +G  PP     + A + +VSD +  + ++ +AK W+ LN  + E
Sbjct: 1081 NINVQEGKVPPEARYKIPAYDPDVSDKLTFKVMEGNAKEWVTLNATSGE 1129


>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 587

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 133 HQIPSPPRVKSFPTAVPV*PRQNLSIPR 216
           + +PSPP++K  P  VPV  RQ   I R
Sbjct: 478 YPVPSPPQIKPMPYPVPVPVRQPPMIQR 505


>SB_14362| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.065)
          Length = 215

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -1

Query: 413 QATGHGCVKFGGVRYDQVEKAKVQCKALDGIECYGSRSFPRDGFPCV 273
           +A GH  V    +    +E  K   + L G+  +  R    DGFPCV
Sbjct: 84  RARGHNVVAAFALLCSHIEFHKNNPELLKGLNAFELRYILEDGFPCV 130


>SB_17059| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-34)
          Length = 333

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = +3

Query: 273 HTRETVTRKASTAITFNSIQGFALNFSFLNLIISDTSKFDATMACGLPGGVIPFMVDRF 449
           H     TR+    I FN    F++ F+ LN  I  TS     +AC     VIP  +  F
Sbjct: 127 HNDIITTRRCLMVIIFN--WAFSILFASLNFYIPPTSMTSLWIACAFITVVIPLTIISF 183


>SB_15694| Best HMM Match : RNA_POL_M_15KD (HMM E-Value=2.9)
          Length = 239

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
 Frame = +1

Query: 7   HNESISFLLLFHPSRSSSTSGXQ-------FLPSSGCRLLVIN 114
           HN       L+ PS+SSS S  Q       + PSSG RLL++N
Sbjct: 28  HNNEYEDDELYSPSQSSSQSSQQSYQSTSAYTPSSGNRLLLVN 70


>SB_25685| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 461 LDCDEPIDHKGNHTARQATGHGCVKFGGVR 372
           L CD P   KGN   + A    C++FG  R
Sbjct: 514 LPCDSPFTQKGNPYKKAALERLCIEFGLTR 543


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 89   EDGRNWXPDVEEDLDGWKSSKNEID 15
            E G +  PD++ED+D  K+ KN ++
Sbjct: 2365 ESGVDMFPDMQEDVDALKAEKNRLN 2389


>SB_36059| Best HMM Match : TolA (HMM E-Value=0.1)
          Length = 1936

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 559 PVINNTVTAVDFVISAIISP*TSYSNVFQQNHRPAEFI*IPYSES 693
           PV++ T T +D+   +++SP T    +  ++  PA+F    Y ES
Sbjct: 67  PVVHVTPTHIDYGTISVLSPVTKTVRLSNESLIPAQFSCCMYPES 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,314,134
Number of Sequences: 59808
Number of extensions: 489092
Number of successful extensions: 1348
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)