Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I06
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14745-13|AAR25658.1|  210|Caenorhabditis elegans Hypothetical p...   128   3e-30
AF003740-5|AAL08031.1|  195|Caenorhabditis elegans Hypothetical ...    57   1e-08
AL161712-16|CAC35892.1|  329|Caenorhabditis elegans Hypothetical...    52   3e-07
AY204177-1|AAO39181.1|  385|Caenorhabditis elegans nuclear recep...    28   8.0  
AL022272-2|CAA18351.1|  385|Caenorhabditis elegans Hypothetical ...    28   8.0  

>L14745-13|AAR25658.1|  210|Caenorhabditis elegans Hypothetical
           protein C02F5.13 protein.
          Length = 210

 Score =  128 bits (310), Expect = 3e-30
 Identities = 63/154 (40%), Positives = 86/154 (55%), Gaps = 7/154 (4%)
 Frame = -1

Query: 506 PLGPLVKCSYLPLEFLDCDEPIDHKG-NHTARQATGHG------CVKFGGVRYDQVEKAK 348
           PLGP+V+C +L   F+ C++P+   G   T +Q           C+K GG R + VE   
Sbjct: 56  PLGPVVECRFLENSFILCEDPVPLYGPGQTGQQPANESFRNEGKCLKMGGYRAEDVEFTN 115

Query: 347 VQCKALDGIECYGSRSFPRDGFPCVRYSGHYFTTTLIYSILLGFLGMDRFCLGQXXXXXX 168
           V+C+ L  IEC+G R+F +   PC+ Y+GHYF TTL+YSI LG + +DRFCLG       
Sbjct: 116 VKCRVLPCIECHGPRTFTKST-PCIIYNGHYFLTTLLYSIFLGVVAVDRFCLGYSAMAVG 174

Query: 167 XXXXXXXXGIWWIVDVVLLITNSRHPEDGRNWXP 66
                   GIWWIVD+ LL+     P D  +W P
Sbjct: 175 KLMTLGGFGIWWIVDIFLLVLGVLGPADDSSWEP 208


>AF003740-5|AAL08031.1|  195|Caenorhabditis elegans Hypothetical
           protein C41D11.9 protein.
          Length = 195

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 32/88 (36%), Positives = 44/88 (50%)
 Frame = -1

Query: 344 QCKALDGIECYGSRSFPRDGFPCVRYSGHYFTTTLIYSILLGFLGMDRFCLGQXXXXXXX 165
           +C A   + C G R+F +   PC   SG+ +T T+I S++LG  G DRF LG        
Sbjct: 105 KCSAHSSVICMGQRNFYKR-IPCNWSSGYSWTKTMILSVVLGGFGADRFYLGLWKSAIGK 163

Query: 164 XXXXXXXGIWWIVDVVLLITNSRHPEDG 81
                  G+W +VDVVL+      P DG
Sbjct: 164 LFSFGGLGVWTLVDVVLIAVGYIKPYDG 191


>AL161712-16|CAC35892.1|  329|Caenorhabditis elegans Hypothetical
           protein Y66D12A.21 protein.
          Length = 329

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
 Frame = -1

Query: 350 KVQCKALDGIECYGSRSFP---RDGFPCVRYSGHY-FTTTLIYSILLGFLGMDRFCLGQX 183
           +V C+  + I+C G   F    R       Y  H  +TTT++ SI LGF G+DR  LG  
Sbjct: 54  QVMCETAEHIKCVGKDQFGIFNRTVPSACHYGAHVSYTTTVLLSIFLGFFGIDRIYLGYY 113

Query: 182 XXXXXXXXXXXXXGIWWIVDVVLLITNSRHPEDG 81
                         ++W+VD++L+      P DG
Sbjct: 114 ALGLIKMFSLGGLFVFWLVDIILISLQLLGPADG 147


>AY204177-1|AAO39181.1|  385|Caenorhabditis elegans nuclear receptor
           NHR-68 protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +1

Query: 547 ALIIPVINNTVTAVDFVISAIISP*TSYSNVFQQNHRPA 663
           A++IPV+N    + D+ +  ++ P  +Y +   +  RPA
Sbjct: 225 AIVIPVLNQVYNSPDYGLDTVVFPDGTYYDRTHEPTRPA 263


>AL022272-2|CAA18351.1|  385|Caenorhabditis elegans Hypothetical
           protein H12C20.3 protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +1

Query: 547 ALIIPVINNTVTAVDFVISAIISP*TSYSNVFQQNHRPA 663
           A++IPV+N    + D+ +  ++ P  +Y +   +  RPA
Sbjct: 225 AIVIPVLNQVYNSPDYGLDTVVFPDGTYYDRTHEPTRPA 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,265,467
Number of Sequences: 27780
Number of extensions: 362556
Number of successful extensions: 901
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)