Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I06
         (743 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18540.1 68417.m02747 expressed protein  ; expression support...    29   3.3  
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P...    29   3.3  
At1g06820.1 68414.m00727 carotenoid isomerase, putative similar ...    28   7.5  
At5g39990.1 68418.m04849 glycosyltransferase family 14 protein /...    27   9.9  
At3g12870.1 68416.m01604 expressed protein                             27   9.9  
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ...    27   9.9  

>At4g18540.1 68417.m02747 expressed protein  ; expression supported
           by MPSS
          Length = 520

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 611 YHHKHRIQMYFNKIIGRPNSFKFPIVSRIKYVLAVVLHSSS 733
           Y H+ RI ++   I+GRPN  K  + +  K+   VV+ +S+
Sbjct: 455 YPHQDRIIVHDTAILGRPNVSKMSVEASKKFGAQVVIVTSN 495


>At3g02530.1 68416.m00241 chaperonin, putative similar to
           SWISS-PROT:P80317- T-complex protein 1, zeta subunit
           (TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 535

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 162 KFPHSCSCLTKTKSIHT*ES*QDAINQGGRKV 257
           K PHSC+ L K  + HT    +DA+  G R V
Sbjct: 370 KNPHSCTILIKGPNDHTIAQIKDAVRDGLRSV 401


>At1g06820.1 68414.m00727 carotenoid isomerase, putative similar to
           carotenoid isomerase from Lycopersicon esculentum
           [gi:19550437]; contains Pfam profile: PF02032 Phytoene
           dehydrogenase related enzyme
          Length = 595

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 335 ALDGIECYGSRSFPRDGFPCVRYSG 261
           A+DG+ C G   FP  G   V +SG
Sbjct: 536 AIDGLYCVGDSCFPGQGVIAVAFSG 560


>At5g39990.1 68418.m04849 glycosyltransferase family 14 protein /
           core-2/I-branching enzyme family protein contains Pfam
           profile: PF02485 Core-2/I-Branching enzyme
          Length = 447

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 25  FLLLFHPSRSSSTSGXQFLPSSGCRLLVINNTTSTIHQIPSPPRVKSFPT 174
           FLL    + +S T G +FLP +   LL  + +++ +     P ++ S P+
Sbjct: 48  FLLFLTTTLTSPTGGVRFLPFTRPVLLTGSGSSAFVESKIKPQQISSLPS 97


>At3g12870.1 68416.m01604 expressed protein
          Length = 206

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = +1

Query: 16  SISFLLLFHPSRSSSTSGXQFLPSSGCR 99
           SIS LLLFH S SSS+S      SS C+
Sbjct: 73  SISLLLLFHASSSSSSSA----SSSACK 96


>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
           finger) family protein similar to SP|O15541 Zinc finger
           protein 183 {Homo sapiens}; contains Pfam profiles
           PF04396: Protein of unknown function, DUF537, PF00097:
           Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
           finger C-x8-C-x5-C-x3-H type (and similar)
          Length = 586

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 109 LPTADTLKMGGIGSQMLKKTWMDGRAAKMKLIHY 8
           +PT     + GIG  ++K TW +   A + LI Y
Sbjct: 426 VPTVSETALSGIGWAVVKWTWYNQPPANLMLISY 459


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,389,172
Number of Sequences: 28952
Number of extensions: 342582
Number of successful extensions: 879
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)