Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_I05
(593 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 30 0.22
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe... 30 0.22
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 29 0.39
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 28 1.2
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 26 4.8
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 6.3
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr... 25 8.3
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 8.3
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac... 25 8.3
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 30.3 bits (65), Expect = 0.22
Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Frame = -3
Query: 543 EVDKQFA--ALNKIEDLKCVYCNFDFRDNREAVKHALSNVYHQSAVAETKLNANKADIIS 370
E++ + A + ++ C++C F KH ++ H + E + ++ +
Sbjct: 192 EIEAELARRSSQRLSPRDCLFCAASFSSFDTCKKHMKAS--HSLYIPEREYLVDEPSLF- 248
Query: 369 VYMKGNYILHSEGASFTCVNCNGVFNSIRSLLMHLVHAEH 250
+Y+ FTC+ CN F S+ ++ H+ H
Sbjct: 249 -----DYLAEKISIGFTCLTCNREFKSLEAVRAHMQQKGH 283
Score = 27.5 bits (58), Expect = 1.6
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 9/100 (9%)
Frame = -3
Query: 327 SFTCVNCNGVFNSIRSLLMHLVHAEHF-------AYRPP--AECTFRYYLELKHNINMLA 175
SF C C FN+ S +H H A PP AE L ++ N
Sbjct: 4 SFACTTCTVAFNNAESQKIHWKSDWHHYNLKRKVASLPPLSAEVFAGKILSIQKQ-NEEV 62
Query: 174 KNKYVYYSFGRFKCGVCDADIEEGENAKRHVLSPKHRENM 55
+ K +Y C VC+ H+ S KHR+N+
Sbjct: 63 QKKAEFYQ----NCEVCNKKFYSEGAYSSHMASKKHRDNL 98
>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 319
Score = 30.3 bits (65), Expect = 0.22
Identities = 30/125 (24%), Positives = 53/125 (42%)
Frame = -3
Query: 513 KIEDLKCVYCNFDFRDNREAVKHALSNVYHQSAVAETKLNANKADIISVYMKGNYILHSE 334
KI+ L+C++CN + NR+ + +H LN AD I + + +E
Sbjct: 91 KIKSLQCLFCNNEGLLNRQ---EWFEHSFHVHG-----LNIGLADNIVYINRLLEKIKNE 142
Query: 333 GASFTCVNCNGVFNSIRSLLMHLVHAEHFAYRPPAECTFRYYLELKHNINMLAKNKYVYY 154
SF C+ C+ + + L H+ + HF P + +Y+ IN + K +
Sbjct: 143 LESFRCLCCHVPCKNKKLLREHMNNKRHFRLDPKSSEYDEFYI-----INYASVTKSITI 197
Query: 153 SFGRF 139
S +F
Sbjct: 198 SHSQF 202
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 29.5 bits (63), Expect = 0.39
Identities = 21/67 (31%), Positives = 26/67 (38%)
Frame = -3
Query: 477 DFRDNREAVKHALSNVYHQSAVAETKLNANKADIISVYMKGNYILHSEGASFTCVNCNGV 298
D N E K + N Y TKL KA + S +GN +L S N NG
Sbjct: 595 DVSKNIERKKETVHNTYRNLMSNRTKLEEMKASLSSSRSRGN-VLESLQRLHESDNLNGF 653
Query: 297 FNSIRSL 277
F + L
Sbjct: 654 FGRLGDL 660
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 27.9 bits (59), Expect = 1.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 248 KCSACTKCIKSDRIELNTP 304
KC+ C +CI+SD + N P
Sbjct: 179 KCNLCYECIESDELRANCP 197
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 198 LIRDNNGRCTPPAVCKQSARRALNASKATESN*IRHCN 311
+IR+NN + P V K A + L A + + I HC+
Sbjct: 607 VIRENNYKGLPLIVVKSFALQGLQALRLLQGQNIIHCD 644
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 6.3
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +2
Query: 455 ASRLSRKSKLQ*THFRSSILFSAANCLSTSLFTXRRRSLATVSMCS 592
A R+SK+Q SS FS +N + S F + SLA+ S S
Sbjct: 55 AQAFLRESKIQIPKSSSSTAFSPSNNNAPSPFPPKNSSLASPSKIS 100
>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -3
Query: 381 DIISVYMKGNYILHSEGASFTCVNCNGVF 295
DII + GA FTC++CN F
Sbjct: 9 DIIKKPKLDQHRSRCHGAYFTCIDCNTTF 37
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 498 KCVYCNFDFRDNREAVKH 445
KC +CN F D+ E KH
Sbjct: 246 KCEFCNTHFYDDDELFKH 263
>SPBC216.01c ||SPBC713.13c|DNA damage response protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 836
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 67 MLRR*DMSFRVLTLLDVRVTNATFEPPKRVINVFVFRQHINVV 195
+L + +F++ L DV V+ EP V+N F+F +++
Sbjct: 297 ILAKIHQTFKLQYLRDVVVSRIVDEPSFSVLNSFIFFNQADII 339
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,413,598
Number of Sequences: 5004
Number of extensions: 48166
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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