Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_I05
(593 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61190.1 68418.m07676 zinc finger protein-related contains Pf... 33 0.19
At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa... 31 0.77
At5g63390.1 68418.m07956 expressed protein contains Pfam PF03138... 29 1.8
At4g09660.1 68417.m01586 hypothetical protein 29 1.8
At5g61940.1 68418.m07775 ubiquitin carboxyl-terminal hydrolase-r... 29 2.3
At5g42640.1 68418.m05191 zinc finger (C2H2 type) family protein ... 29 2.3
At4g26030.1 68417.m03748 hypothetical protein 29 3.1
At5g40060.1 68418.m04860 disease resistance protein (TIR-NBS-LRR... 28 4.1
At2g15740.1 68415.m01802 zinc finger (C2H2 type) family protein ... 28 4.1
At3g05760.1 68416.m00647 expressed protein 28 5.4
At5g24870.2 68418.m02943 zinc finger (C3HC4-type RING finger) fa... 27 7.1
At5g24870.1 68418.m02942 zinc finger (C3HC4-type RING finger) fa... 27 7.1
At4g39710.1 68417.m05620 immunophilin, putative / FKBP-type pept... 27 7.1
At3g27970.1 68416.m03491 exonuclease family protein contains exo... 27 7.1
At1g06790.2 68414.m00722 RNA polymerase Rpb7 N-terminal domain-c... 27 7.1
At1g06790.1 68414.m00723 RNA polymerase Rpb7 N-terminal domain-c... 27 7.1
At5g67120.1 68418.m08462 zinc finger (C3HC4-type RING finger) fa... 27 9.4
At3g30520.1 68416.m03863 hypothetical protein 27 9.4
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa... 27 9.4
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa... 27 9.4
At2g23310.1 68415.m02782 RER1C protein identical to SP|Q9ZWI7 RE... 27 9.4
At1g55700.1 68414.m06378 DC1 domain-containing protein contains ... 27 9.4
At1g34170.1 68414.m04238 transcriptional factor B3 family protei... 27 9.4
>At5g61190.1 68418.m07676 zinc finger protein-related contains Pfam
profile PF04396: Protein of unknown function DUF537,
weak hit to PF00096: Zinc finger C2H2 type
Length = 977
Score = 32.7 bits (71), Expect = 0.19
Identities = 26/104 (25%), Positives = 36/104 (34%), Gaps = 4/104 (3%)
Frame = -3
Query: 354 NYILHSEGAS----FTCVNCNGVFNSIRSLLMHLVHAEHFAYRPPAECTFRYYLELKHNI 187
N + HS GA+ TC CN V +S HL H + E +
Sbjct: 229 NMLQHSSGATGESATTCRICNVVCDSFEKFTAHLSDIRHISQAAIVESR-------RAQA 281
Query: 186 NMLAKNKYVYYSFGRFKCGVCDADIEEGENAKRHVLSPKHRENM 55
++ AK + C VC + K H KHR N+
Sbjct: 282 SVSAKPIHQAVLVEPLLCKVCQISFTNNDTYKNHTYGKKHRNNL 325
>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 525
Score = 30.7 bits (66), Expect = 0.77
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -3
Query: 582 ETVAKLLRLXVNNEVDKQFA-ALNKIEDLKCVYCNFDFRDNREAVKHALSNVYHQSAVAE 406
E +++ L+ + E D+ + +L K +D+KC C ++ D E ++YH S V +
Sbjct: 445 EALSRSLKQSIYQETDETGSISLYKDDDIKCSICQEEYVDGDELGTIPCQHMYHVSCVQQ 504
>At5g63390.1 68418.m07956 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'auxin-independent growth promoter-related protein'
based on similarity to axi 1 protein (GB:X80301)
(GI:559920) from [Nicotiana tabacum], which, due to
scienitific fraud was retracted. Retraction in: Schell
J. EMBO J 1999 May 17;18(10):2908. PMID:10400497.;
expression supported by MPSS
Length = 559
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 453 RPHGYPENRSCNKRISDLRFYSVPQIVCRLRCSRXDG 563
+ GYPE+R +R D+ Y VP+ +CR R R G
Sbjct: 522 KSQGYPESRR-GRRDRDVIAYPVPECMCRHRKHRSVG 557
>At4g09660.1 68417.m01586 hypothetical protein
Length = 664
Score = 29.5 bits (63), Expect = 1.8
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Frame = -3
Query: 540 VDKQFAALNKIEDLKCVYCNFDFRDNREAVKHALSNVYHQSAVAETKLNANKADIISVYM 361
VD+ A NK E + V F F D VK V H V ET + K+ I S++
Sbjct: 232 VDESADASNK-EQMTVV---FRFVDKYGVVKERFIGVIH---VKETSSLSLKSAIDSLFA 284
Query: 360 K-GNYILHSEGASFT-CVNCNGVFNSIRSLLMHLVHAEH 250
K G + G + N G FN +RSL++ + +H
Sbjct: 285 KYGLSLKKLRGQGYDGASNMKGEFNGLRSLILKEIAKKH 323
>At5g61940.1 68418.m07775 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1094
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -3
Query: 591 EHMETVAKLLRLXVNNEVDKQFAALNKIEDLKCVYCNFDFRDNR-EAVKHALSNVY 427
EH+E+VA N+ D AL I+ LK N F+D++ E V AL N++
Sbjct: 833 EHLESVAGEATTRYNSAFDMTLKALLNIKVLKEDLLNQPFQDHQEEQVPIALQNLF 888
>At5g42640.1 68418.m05191 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 300
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/75 (22%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = -3
Query: 483 NFDFRDNREAVKHAL-SNVYHQSAVAETKLNANKADIISVYMKGNYILHSEGASFTCVNC 307
N F+D R K + +N++ +S +++ + K D + + + +++ +TC C
Sbjct: 190 NHVFQDGRSLKKISEPTNLFEKSNSYDSQED-EKIDAYQYDGRTHSLPYTKYGPYTCPRC 248
Query: 306 NGVFNSIRSLLMHLV 262
NGVF++ + H++
Sbjct: 249 NGVFDTSQKFAAHML 263
>At4g26030.1 68417.m03748 hypothetical protein
Length = 220
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/29 (34%), Positives = 22/29 (75%), Gaps = 2/29 (6%)
Frame = -3
Query: 330 ASFTCVNCNGVFNSIRSLLMH--LVHAEH 250
+SF C+ CN +F++ + L++H L+H+++
Sbjct: 156 SSFICLKCNSLFDTSQMLVVHTELIHSKN 184
>At5g40060.1 68418.m04860 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein. False intron
created at intron 2 to escape a frameshift in the BAC
sequence.
Length = 1165
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 129 VCDADIEEGENAKRHVLSPKHRENMGATYINEDASAGRVR 10
VC+AD + +N +RH +H E G + + S R++
Sbjct: 1120 VCEADESKLDNDRRHAHETEHGEECGDSNVETVVSRKRIK 1159
>At2g15740.1 68415.m01802 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 329
Score = 28.3 bits (60), Expect = 4.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 324 FTCVNCNGVFNSIRSLLMHL 265
+TC CNGVFN+ + H+
Sbjct: 244 YTCPKCNGVFNTSQKFAAHM 263
>At3g05760.1 68416.m00647 expressed protein
Length = 202
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -3
Query: 135 CGVCDADIEEGENAKRHVLSPKHRENMGATYINEDASAGRVR 10
C VCD +++ N H+ KH+ +G + E +S +V+
Sbjct: 85 CRVCDCVVKDSANYLDHINGKKHQRALGMSMRVERSSLEQVQ 126
>At5g24870.2 68418.m02943 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 520
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 549 NNEVDKQFAALNKIEDLKCVYCNFDFRDNREAVKHALSNVYHQSAVAE 406
N+E D LNK +D+KC C ++ D E + YH S +
Sbjct: 452 NDESDD--ICLNKDDDVKCSICQEEYVDGDEVGTLPCQHKYHVSCAQQ 497
>At5g24870.1 68418.m02942 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 520
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 549 NNEVDKQFAALNKIEDLKCVYCNFDFRDNREAVKHALSNVYHQSAVAE 406
N+E D LNK +D+KC C ++ D E + YH S +
Sbjct: 452 NDESDD--ICLNKDDDVKCSICQEEYVDGDEVGTLPCQHKYHVSCAQQ 497
>At4g39710.1 68417.m05620 immunophilin, putative / FKBP-type
peptidyl-prolyl cis-trans isomerase, putative similar to
FK506 binding protein 1 (GP:21535744) [Arabidopsis
thaliana]
Length = 217
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -3
Query: 156 YSFGRFKCGVCDADIEEGENAKRHVLSPKHRENMGATYINEDASAGRVR 10
YS+ + G CD D+ G+ A R VL H A D+S R R
Sbjct: 89 YSYAKSGLGFCDLDVGFGDEAPRGVLVNIHYTARFADGTLFDSSYKRAR 137
>At3g27970.1 68416.m03491 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 354
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -3
Query: 231 AECTFRYYLELKHNINMLAKNKYVYYSFGRFKCGVCDADIEEGENAKRHVLSP 73
A C +R + +L+H + + K Y+S CGVC E+ + H++ P
Sbjct: 18 AAC-YRQFNKLEHLVEHM---KISYHSGHEPTCGVCKKHCRSFESLREHLIGP 66
>At1g06790.2 68414.m00722 RNA polymerase Rpb7 N-terminal
domain-containing protein similar to SP|P35718
DNA-directed RNA polymerase III 25 kDa polypeptide (EC
2.7.7.6) {Saccharomyces cerevisiae}; contains Pfam
profile PF03876: RNA polymerase Rpb7, N-terminal domain
Length = 189
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -3
Query: 459 EAVKHALSNVYHQSAVAETKLNANKADIISVYMKGNYILHSEGAS 325
+A+K L NV+ +A+ L + DI SV +G ++L +GA+
Sbjct: 24 DAIKSVLQNVFLDKVLADLGLCVSIYDIKSV--EGGFVLPGDGAA 66
>At1g06790.1 68414.m00723 RNA polymerase Rpb7 N-terminal
domain-containing protein similar to SP|P35718
DNA-directed RNA polymerase III 25 kDa polypeptide (EC
2.7.7.6) {Saccharomyces cerevisiae}; contains Pfam
profile PF03876: RNA polymerase Rpb7, N-terminal domain
Length = 204
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -3
Query: 459 EAVKHALSNVYHQSAVAETKLNANKADIISVYMKGNYILHSEGAS 325
+A+K L NV+ +A+ L + DI SV +G ++L +GA+
Sbjct: 24 DAIKSVLQNVFLDKVLADLGLCVSIYDIKSV--EGGFVLPGDGAA 66
>At5g67120.1 68418.m08462 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 272
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/57 (21%), Positives = 24/57 (42%)
Frame = -3
Query: 546 NEVDKQFAALNKIEDLKCVYCNFDFRDNREAVKHALSNVYHQSAVAETKLNANKADI 376
N + +++ + E +CV C +DN E K + +H + + NK +
Sbjct: 210 NLIRRKYEKRSDDETKRCVICQQKLKDNEEVSKLGCGHDFHFGCIKNWLMVTNKCPL 266
>At3g30520.1 68416.m03863 hypothetical protein
Length = 397
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 398 SFVSATALWWYTLESACLTASRLSRK 475
SF++A+ WW E C L+RK
Sbjct: 60 SFINASDAWWTEQEFGCKLTKNLNRK 85
>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 168 KYVYYSFGRFKCGVCDADIEEGENAKRHVLSPKH 67
K Y+S + +CGVC + E+ + H+ P H
Sbjct: 37 KISYHSLHQPRCGVCLKHCKSFESVREHLNVPDH 70
>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 168 KYVYYSFGRFKCGVCDADIEEGENAKRHVLSPKH 67
K Y+S + +CGVC + E+ + H+ P H
Sbjct: 37 KISYHSLHQPRCGVCLKHCKSFESVREHLNVPDH 70
>At2g23310.1 68415.m02782 RER1C protein identical to SP|Q9ZWI7 RER1C
protein (AtRER1C) {Arabidopsis thaliana}
Length = 212
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 213 YYLELKHNINMLAKNKYVYYSFGRFKCGVCDADIEEGE 100
++L ++ I + K +YV +SFG+ + G A E E
Sbjct: 175 FFLTMRKQIQHMIKYRYVPFSFGKKQYGKKPAPTESSE 212
>At1g55700.1 68414.m06378 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 679
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 257 PSTLLTDRRRSAPSVIISN*NTTLICWR 174
P++ ++RS SVI +N NT IC+R
Sbjct: 619 PTSFYIKQKRSTVSVIRNNDNTRAICYR 646
>At1g34170.1 68414.m04238 transcriptional factor B3 family protein
contains Pfam profile: PF02362 B3 DNA binding domain;
contains non-consensus GA donor splice site at intron 12
Length = 623
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = -1
Query: 554 P*TTKSTNNLRH*IKSKI*NAFIATSIFGITVRPSNMRFLM 432
P + S N ++H + + + NAF +F + +PS+ +F++
Sbjct: 237 PSSVISANCMQHGVIASVVNAFKTKCMFNVVYKPSSSQFVI 277
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,860,666
Number of Sequences: 28952
Number of extensions: 256364
Number of successful extensions: 790
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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