Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I04
         (345 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    28   0.47 
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   0.62 
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   3.3  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    24   5.8  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    24   5.8  
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    24   7.6  

>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 27.9 bits (59), Expect = 0.47
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 4/107 (3%)
 Frame = -1

Query: 342 MN*VYGYFTLLSGCGIQENFNLFL-RIKVNKNINKMSAWRQAGLTYINYSNIAAKVLRRS 166
           +N    +  LL+G   Q+  N +  +I + K I+ +  WRQ GLT +   +   +   + 
Sbjct: 252 LNKTKAFARLLTGPDYQKFVNSYHEQITLKKQISDLQEWRQMGLTTLEQGHKYERDKTQK 311

Query: 165 LKQEFRAEALKRDEXHVRVTPWANGRP---AHLQKAVPK*RRKSEPT 34
                 + +  +   HV+        P     +QK VP  R+ + PT
Sbjct: 312 FLLSKASASYDKQLRHVKSFNQTTSAPFQVRDIQKIVP--RKPATPT 356


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 27.5 bits (58), Expect = 0.62
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 174  EAPWLRCLSSLCKLNQLASKRSFC*CSYL 260
            +AP L  LS++C  +  + KR FC  +YL
Sbjct: 967  DAPALSLLSAVCAYDYASDKRKFCKENYL 995


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 134 NVTXLTSESHLGPTDDLHTSRKLFQS 57
           +V+ L+S SHL PT    +S +L+ S
Sbjct: 229 SVSALSSSSHLQPTSATSSSSRLYPS 254


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -1

Query: 183 KVLRRSLKQEFRAEALKRDEXHVRVTPWANGRPAHL 76
           K  + S  + FR     RD+   +  P +N  P HL
Sbjct: 224 KEKQTSFLRRFRVPGFSRDKDKTKDCPSSNSNPFHL 259


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 118 RQSHTLGQRTTCTPPESCSKVKK 50
           ++S     +T  TPP+ CS +KK
Sbjct: 39  KESLAASVKTPSTPPKECSHLKK 61


>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +3

Query: 33  MLVHSSFFTLEQLSGGVQVVR 95
           +L+H +F+T E++   +Q+VR
Sbjct: 232 ILLHDTFYTYEEVYHDLQIVR 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,326,467
Number of Sequences: 5004
Number of extensions: 22145
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)