Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I04
         (345 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0930 - 9173245-9173305,9173438-9173504,9173856-9174042           59   8e-10
02_04_0349 + 22222091-22222639,22222718-22223695                       28   1.7  
05_02_0145 + 7067521-7068993                                           27   3.9  
02_05_0801 + 31824548-31825064,31825231-31826171                       27   3.9  
04_03_0353 - 14785648-14787213                                         27   5.2  
02_04_0351 + 22249117-22249624,22249710-22250674                       26   9.1  

>08_01_0930 - 9173245-9173305,9173438-9173504,9173856-9174042
          Length = 104

 Score = 59.3 bits (137), Expect = 8e-10
 Identities = 22/48 (45%), Positives = 35/48 (72%)
 Frame = -1

Query: 231 WRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDEXHVRVTPWANGR 88
           WR AG+TYI YSN+ A ++RR LK+  ++EA  R++ H  ++ WA+G+
Sbjct: 11  WRAAGMTYIGYSNVCAALVRRCLKEPHKSEAASREKVHFAISKWADGK 58


>02_04_0349 + 22222091-22222639,22222718-22223695
          Length = 508

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 36  LVHSSF-FTLEQLSGGVQVVRWP 101
           L HS +  TLE LSGGV ++ WP
Sbjct: 398 LTHSGWNSTLESLSGGVPMLSWP 420


>05_02_0145 + 7067521-7068993
          Length = 490

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 30  CMLVHSSF-FTLEQLSGGVQVVRWP 101
           C L H  +  TLE +S GV ++ WP
Sbjct: 381 CFLTHCGWNSTLESVSNGVPMIAWP 405


>02_05_0801 + 31824548-31825064,31825231-31826171
          Length = 485

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 9   INS*XFSCMLVHSSF-FTLEQLSGGVQVVRWP 101
           +N       L HS +  TLE L+ GV V+ WP
Sbjct: 369 LNHPAVGAFLTHSGWNSTLESLAAGVPVISWP 400


>04_03_0353 - 14785648-14787213
          Length = 521

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 36  LVHSSF-FTLEQLSGGVQVVRWP 101
           L HS +  TLE ++GGV +V WP
Sbjct: 417 LTHSGWNSTLESIAGGVPMVCWP 439


>02_04_0351 + 22249117-22249624,22249710-22250674
          Length = 490

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 36  LVHSSF-FTLEQLSGGVQVVRWP 101
           L HS +  T+E LSGGV ++ WP
Sbjct: 381 LTHSGWNSTVEALSGGVPMLCWP 403


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,511,539
Number of Sequences: 37544
Number of extensions: 140539
Number of successful extensions: 346
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)