Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I04
         (345 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.1  
SB_28811| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_54969| Best HMM Match : Orthopox_F6 (HMM E-Value=4.4)               27   5.4  
SB_3667| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   7.1  
SB_13256| Best HMM Match : rve (HMM E-Value=1.1e-17)                   26   7.1  
SB_1962| Best HMM Match : Leu_leader (HMM E-Value=5.2)                 26   7.1  
SB_49940| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.4  
SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08)                   26   9.4  
SB_19130| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.4  
SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     26   9.4  
SB_35882| Best HMM Match : Neur_chan_memb (HMM E-Value=8.8e-26)        26   9.4  
SB_24526| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.4  
SB_7484| Best HMM Match : Neur_chan_memb (HMM E-Value=1.3e-10)         26   9.4  

>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 127  RXSRQSHTLGQRTTCTPPESCSKVKKEE*TNMHE 26
            R     H  GQ    TPP+SCS + ++  T   E
Sbjct: 1221 RNKVMDHNYGQPPPMTPPDSCSPIPEDVDTGNEE 1254


>SB_28811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 982

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = -3

Query: 244 QNERLEASWFNLHKLLKHRSQGASQVTKARISSRGVET*RXSRQSHTLGQRTTCTP 77
           +NER+ A+W  +++ LK  ++   + T  R++ R       SR S  +G + T  P
Sbjct: 152 RNERISATWMCVYRSLKQFAKVFGEETGGRMTIRS-----ASRHSIKVGPQETLIP 202


>SB_54969| Best HMM Match : Orthopox_F6 (HMM E-Value=4.4)
          Length = 130

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -1

Query: 312 LSGCGIQENFNLFLRIKVNKNINKMSAWRQAGLTYINYSNIAAKVLRRSLKQE 154
           L+ C + EN ++   + + +NI K        LTY ++      V++ ++K E
Sbjct: 60  LAQC-VNENIDIITNMDILRNIVKKKNRLDVNLTYASHQGRLVTVIQEAMKDE 111


>SB_3667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 11/53 (20%), Positives = 25/53 (47%)
 Frame = -1

Query: 276 FLRIKVNKNINKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDEXH 118
           F+  + +    +  + R   +TY N+S+  A+  + +  Q+ R E ++    H
Sbjct: 333 FIANRAHLTSRRAHSSRAKSVTYANFSSTEARRAKTTSSQDIRTEQIQASRYH 385


>SB_13256| Best HMM Match : rve (HMM E-Value=1.1e-17)
          Length = 321

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 73  LEVCRSSVGPRCDSDVXFVTFQRLCSK 153
           L  C SSV PR D+D   +TF+  C K
Sbjct: 291 LNHCTSSVPPRFDND-RQITFKEACKK 316


>SB_1962| Best HMM Match : Leu_leader (HMM E-Value=5.2)
          Length = 140

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 264 KVNKNINKMSAWRQAGLTYINYSNIAAKVLRRS 166
           ++N ++NKMS+W       +N S   A +L  S
Sbjct: 32  ELNSSLNKMSSWSSTSHLLLNASKTKAMLLSTS 64


>SB_49940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 569

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = -1

Query: 255 KNINKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDEXHVRV 109
           +N+N+   W +A L  +   +   K+   S++QE RA   ++ E +  +
Sbjct: 436 QNVNRAFEWVRAELLAMKAQDFTLKMQFDSIRQEMRAMIEEQQEYYAYI 484


>SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08)
          Length = 961

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -3

Query: 205 KLLKHRSQGASQVTKARISSRGVET*RXSRQSHTLGQRTTCTPPESCSKVKKEE 44
           +LLK ++ G   VTK  +++   E  R   +  +L QR      E  S  +K E
Sbjct: 71  RLLKLKTDGTELVTKVSVAADAREAMRRLEEEESLRQRNEKLEAEIKSAAEKFE 124


>SB_19130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 658

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 142 GVET*RXSRQSHTLGQRTTCTPPESCSKVKKEE 44
           G  T R  R + T   RTT  P + C K+K ++
Sbjct: 347 GQATPRPERPARTSHSRTTSQPSQYCGKMKYDD 379


>SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 935

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -1

Query: 312 LSGCGIQE--NFNLFLRIKVNKNINKMSAWRQAGLTYINYSNIAAKVLRR 169
           + GCG++     +L + +    N     A  Q G+T+ N SN++  + RR
Sbjct: 331 VEGCGLRFPCGSDLTVHMSSKHNTTWPFACEQCGVTFANRSNLSKHIRRR 380


>SB_35882| Best HMM Match : Neur_chan_memb (HMM E-Value=8.8e-26)
          Length = 360

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 220 SLPPSAHFVNVLIYFYSQK*IEIFL 294
           S+PP++  V ++  FYS   IE+FL
Sbjct: 145 SIPPTSEAVPLIGIFYSASMIEVFL 169


>SB_24526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 153 FRAEALKRDEXHVRVTPWANGRPAH 79
           FR   L   +  VR +PWA  RPA+
Sbjct: 105 FRGPPLFAPKSRVRASPWACTRPAY 129


>SB_7484| Best HMM Match : Neur_chan_memb (HMM E-Value=1.3e-10)
          Length = 384

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 220 SLPPSAHFVNVLIYFYSQK*IEIFL 294
           S+PP++  V ++  FYS   IE+FL
Sbjct: 209 SIPPTSEAVPLIGIFYSASMIEVFL 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,726,944
Number of Sequences: 59808
Number of extensions: 155603
Number of successful extensions: 390
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)