Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_I03
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces... 177 1e-45
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po... 27 3.9
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 26 5.1
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 26 6.7
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 26 6.7
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 25 8.9
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 8.9
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 25 8.9
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 8.9
>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 177 bits (431), Expect = 1e-45
Identities = 91/151 (60%), Positives = 107/151 (70%), Gaps = 3/151 (1%)
Frame = -3
Query: 761 AVCVLRGD--VSGTVXFDQQDEKSPVVVSGEVQGL-TKGKHGFHVHEFGDNTNGCTSAGA 591
AV VLRGD VSG V F+Q D+ S V V ++ G K GFH+H+FGDNTNGCTSAG
Sbjct: 4 AVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAGP 63
Query: 590 HFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHA 411
HFNPE + HG ++AVRHVGDLGN+E+ + G K + DS ISL G NSIIGRT+V+HA
Sbjct: 64 HFNPEGKTHGDRTAAVRHVGDLGNLES-DAQGNIKTTFSDSVISLFGANSIIGRTIVIHA 122
Query: 410 DPDDLGLGGHELSKTTGNAGGRIACGVIGLA 318
DDLG G E S TGNAG R ACGVIG+A
Sbjct: 123 GEDDLGKGTSEESLKTGNAGARNACGVIGIA 153
>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 213
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 606 ATVCVVTKFVHMETVFALSQ-ALDLSRNNNR*LFILLIEXNSSANIT 743
A +C+ + VH++ V +LS+ +S N N+ L +LLI S+ T
Sbjct: 144 AGLCIGDELVHVQNVTSLSELPTFISNNVNKTLDVLLIRGYSADGST 190
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 26.2 bits (55), Expect = 5.1
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Frame = -3
Query: 530 DLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAG 351
D+ NI+ ++ + ++++ Q++ N + R + + L L H L+ G AG
Sbjct: 431 DIINIDIEKEKTIEEIAMGFIQVA----NETMCRPIRKLTESRGLDLSAHHLA-VFGGAG 485
Query: 350 GRIACGV---IGLAKI*IHTF 297
G+ AC + + + KI IH +
Sbjct: 486 GQHACAIASLLNIEKIIIHKY 506
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 548 AVRHVGDLGNIEAIEDSGVTKVSIQDSQ 465
A R DL NI +ED V+ S+ DS+
Sbjct: 231 AKRERDDLKNIMQLEDESVSTTSVHDSE 258
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 586 STLKNKIMVVPVLLYAMSATSVTLRQLKTLESLK 485
STLK + + PV L A+ ++LR L ESL+
Sbjct: 326 STLKRRHVRAPVSLDAVDGIELSLRDLNDEESLQ 359
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 25.4 bits (53), Expect = 8.9
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +3
Query: 288 T*EKCMYLNLGQANDSTSNTATSITSGLT*LMATQ----SQVIRVSMDN*SATNDAVRSM 455
T +K N + D+ S+ TS + G++ + + S + ++ ++ S+TND +R +
Sbjct: 492 TFDKAQLSNTEDSYDNISH-GTSYSEGVSSIHMVKGERGSNNLELTSESLSSTNDTIRRL 550
Query: 456 KRDL 467
+RDL
Sbjct: 551 QRDL 554
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 607 QPFVLSPNSCTWKPCLPLVKPWTSPETT 690
+PF L+P + + P +KPW P T
Sbjct: 1190 RPFNLTPFAISLNALTPQLKPWLPPTDT 1217
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 418 TTKVRPMMLLGP*REIWESWIDTLVTP 498
+T + P LL E+WE DT +TP
Sbjct: 78 STLIEPNYLLTAWHELWEELQDTYMTP 104
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -1
Query: 592 LISTLKNKIMVVPVLLYAMSATSVTLRQLKTLES-LKYQSKIPRSLFM 452
L++T + + +PVLLY + ++ + L++ ES + + KI +L M
Sbjct: 1130 LLNTASHTAVKLPVLLYILDTLNLVITHLQSEESESQLREKILANLVM 1177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,083,991
Number of Sequences: 5004
Number of extensions: 63789
Number of successful extensions: 160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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