Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_I03
(763 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 193 1e-49
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 190 1e-48
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 182 4e-46
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 142 3e-34
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 57 2e-08
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 38 0.007
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260... 30 2.3
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 29 5.3
11_06_0756 + 26952196-26952264,26952760-26953206,26954009-269553... 28 7.1
02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810 28 7.1
07_03_0716 + 20905041-20905851,20906644-20906825,20907117-209073... 28 9.3
03_06_0131 - 31900700-31900992,31901039-31901720 28 9.3
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 193 bits (471), Expect = 1e-49
Identities = 87/139 (62%), Positives = 101/139 (72%)
Frame = -3
Query: 737 VSGTVXFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGG 558
V GT+ F Q+ + P V+G V GL G HGFH+H GD TNGC S G H+NP ++HG
Sbjct: 132 VKGTIHFVQEGD-GPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGA 190
Query: 557 PSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHE 378
P RH GDLGN+ A ED GV + + DSQI L GPNSIIGR +VVHADPDDLG GGHE
Sbjct: 191 PEDETRHAGDLGNVTAGED-GVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHE 249
Query: 377 LSKTTGNAGGRIACGVIGL 321
LSKTTGNAGGR+ACG+IGL
Sbjct: 250 LSKTTGNAGGRVACGIIGL 268
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 190 bits (462), Expect = 1e-48
Identities = 92/149 (61%), Positives = 104/149 (69%), Gaps = 2/149 (1%)
Frame = -3
Query: 761 AVCVLRGD--VSGTVXFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAH 588
AV VL V GT+ F Q+ + P V+G V GL G HGFHVH GD TNGC S G H
Sbjct: 4 AVAVLASSEGVKGTIFFSQEGD-GPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPH 62
Query: 587 FNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHAD 408
FNP ++HG P RH GDLGNI A D GV V++ DSQI L G +SIIGR +VVHAD
Sbjct: 63 FNPTGKEHGAPQDENRHAGDLGNITAGAD-GVANVNVSDSQIPLTGAHSIIGRAVVVHAD 121
Query: 407 PDDLGLGGHELSKTTGNAGGRIACGVIGL 321
PDDLG GGHELSKTTGNAGGR+ACG+IGL
Sbjct: 122 PDDLGKGGHELSKTTGNAGGRVACGIIGL 150
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 182 bits (442), Expect = 4e-46
Identities = 88/152 (57%), Positives = 101/152 (66%), Gaps = 2/152 (1%)
Frame = -3
Query: 761 AVCVLRG--DVSGTVXFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAH 588
AV VL+G V G V Q D++ P V+ V GLT G HGFH+HEFGD TNGC S G H
Sbjct: 54 AVAVLKGTSQVEGVVTLTQ-DDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPH 112
Query: 587 FNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHAD 408
FNP HG P VRH GDLGNI A GV + +I D QI L GPNS++GR VVH
Sbjct: 113 FNPNNLTHGAPEDEVRHAGDLGNIVA-NAEGVAEATIVDKQIPLSGPNSVVGRAFVVHEL 171
Query: 407 PDDLGLGGHELSKTTGNAGGRIACGVIGLAKI 312
DDLG GGHELS +TGNAGGR+ACGV+GL +
Sbjct: 172 EDDLGKGGHELSLSTGNAGGRLACGVVGLTPL 203
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 142 bits (344), Expect = 3e-34
Identities = 67/117 (57%), Positives = 77/117 (65%)
Frame = -3
Query: 737 VSGTVXFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGG 558
V+G + F Q V G V GL G HGFH+H FGD TNGC S G HFNP + HG
Sbjct: 23 VAGALHFFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGA 82
Query: 557 PSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLG 387
PS RHVGDLGNI A +D GV + I+D QISL GP+SI+GR +VVHAD DDLG G
Sbjct: 83 PSDDERHVGDLGNIVANKD-GVADIFIKDLQISLSGPHSILGRAVVVHADSDDLGRG 138
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 56.8 bits (131), Expect = 2e-08
Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 2/136 (1%)
Frame = -3
Query: 761 AVCVLRGDVSGTVXFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFN 582
AV +G V V Q +V GL+ GKHG+ ++EFGD T G S G +N
Sbjct: 167 AVAEFKGPVIFGVVRLAQVNMELAIVEATFSGLSPGKHGWSINEFGDLTRGAESTGKVYN 226
Query: 581 PEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHA--D 408
P P +GDLG +EA E G + S ++ + +IGR++ ++A D
Sbjct: 227 PSDYRSNKP------LGDLGTLEAGE-KGEAQFSASKEKLKV---VDLIGRSIALYATED 276
Query: 407 PDDLGLGGHELSKTTG 360
D G+ ++++ G
Sbjct: 277 RSDPGIAAAVIARSAG 292
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = -3
Query: 698 SPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAG 594
S + V V GL HGFHVH G TNGC G
Sbjct: 35 SLITVKENVSGLKPVLHGFHVHALGGTTNGCMRNG 69
>02_01_0362 +
2607097-2607371,2607766-2608612,2608842-2608910,
2609968-2610202,2610454-2610536,2610924-2611046,
2611326-2611379
Length = 561
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 347 GHQHYQWSYLAHGHPVPSHQGQHG 418
G QH W +AH HP+ S Q HG
Sbjct: 294 GDQHGDWIAIAHQHPLLSMQLSHG 317
>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 452 GPNSIIGRTLVVHADPDDLGLGG 384
GP + +GR L+ +DP+D+G G
Sbjct: 1048 GPEATVGRPLLSSSDPEDIGTEG 1070
>11_06_0756 +
26952196-26952264,26952760-26953206,26954009-26955358,
26955400-26955408
Length = 624
Score = 28.3 bits (60), Expect = 7.1
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Frame = -3
Query: 596 GAHFNPEKQDH--GGPSSAVRHVGD--LGNIE---AIEDSGVTKVSIQDSQISLHGPNSI 438
GA +PE H G V D L NI A+ G+ V+ D+++SL
Sbjct: 222 GASHDPEALLHIAQGSRGTYSFVDDDNLANIAGALAVCLGGLKTVAAVDTRVSLKAAELS 281
Query: 437 IGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVI 327
G +V D GG+E S G A G + GV+
Sbjct: 282 GGGARIVRVDS-----GGYESSVACGGASGEVVVGVL 313
>02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810
Length = 472
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = -3
Query: 623 DNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPN 444
D TS GAH +P + H PSS + + + S T VS++ ++ PN
Sbjct: 15 DIVKAATSPGAHSSPLRPAHSSPSSTLSEASNTSS------SSATSVSLKRARAPRKRPN 68
>07_03_0716 +
20905041-20905851,20906644-20906825,20907117-20907330,
20907416-20907653,20907905-20908058,20908190-20908461,
20908703-20908808
Length = 658
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = +3
Query: 255 MKSLNIVVPSPT*EKCMYLNLGQANDSTSNTATSITSGLT*LMATQSQVIRVSMDN*SAT 434
+ S + +P P Y+ ++DS+ N + SIT L Q VI ++MD +
Sbjct: 586 LNSEEMTLPKPNQPAYFYVRSSGSDDSSCNNSISIT--LARQTVRQWTVISINMDGRVSG 643
Query: 435 NDAVRSMKRDLGILD 479
A+ K +L D
Sbjct: 644 RAAIFKSKYELSATD 658
>03_06_0131 - 31900700-31900992,31901039-31901720
Length = 324
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 530 DLGNIEAIEDSGVTKVSIQDSQISLHGPNS 441
D+ ++ + DSG +I +S HGPNS
Sbjct: 120 DVDHLSILTDSGAVHRAISGEPVSEHGPNS 149
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,948,747
Number of Sequences: 37544
Number of extensions: 421645
Number of successful extensions: 1131
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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