Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I03
         (763 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)               176   2e-44
SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)                80   2e-15
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)                55   5e-08
SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23)                  31   1.4  
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)         30   1.8  
SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)           29   4.1  
SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score =  176 bits (428), Expect = 2e-44
 Identities = 76/130 (58%), Positives = 99/130 (76%)
 Frame = -3

Query: 704 EKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDL 525
           E  P  ++G ++GL  G HGFH+H +GDNTNGC SAG HFNP K++HGGPS   RHVGDL
Sbjct: 24  EGKPCKITGTIEGLKAGNHGFHIHVYGDNTNGCVSAGPHFNPFKKEHGGPSDENRHVGDL 83

Query: 524 GNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGR 345
           GN+ A  D G   + + D+ ++L G +S++GR++VVHAD DDLG GGHE SKTTG+AGGR
Sbjct: 84  GNVVA-GDDGKACIDMTDALVTLVGEHSVVGRSVVVHADEDDLGRGGHEDSKTTGHAGGR 142

Query: 344 IACGVIGLAK 315
           +ACGVIG+ +
Sbjct: 143 LACGVIGITQ 152


>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
          Length = 100

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 39/71 (54%), Positives = 49/71 (69%)
 Frame = -3

Query: 539 HVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTG 360
           HVGDLGNI A ++   T    +D  + +     IIGR +VVHAD DDLG GGHELSK+TG
Sbjct: 1   HVGDLGNIIANQNGRAT-FRFEDKTVKVW---DIIGRAIVVHADEDDLGRGGHELSKSTG 56

Query: 359 NAGGRIACGVI 327
           N+G R+ CG+I
Sbjct: 57  NSGARVGCGII 67


>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 28/49 (57%), Positives = 34/49 (69%)
 Frame = -3

Query: 566 HGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLV 420
           HG P    RH+GDLGNIEA + +G+  VSI D  +SL G  SIIGR+LV
Sbjct: 2   HGAPEDKDRHLGDLGNIEA-DANGIADVSITDCLVSLTGQCSIIGRSLV 49


>SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23)
          Length = 710

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 24/93 (25%), Positives = 43/93 (46%)
 Frame = -3

Query: 650 HGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQD 471
           H  H++    + + C +  +  +  +  HGG  S++     +GN  +    G    S+ D
Sbjct: 309 HDNHLNPSSYDNHSCLANQSSLSDNQSSHGGNHSSL-----VGNQSS---HGGNHSSLDD 360

Query: 470 SQISLHGPNSIIGRTLVVHADPDDLGLGGHELS 372
           +Q SL G  SI+G     H + +  GLG ++ S
Sbjct: 361 NQSSLGGNQSILGDNQSSHGN-EKSGLGDNQSS 392


>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
          Length = 1531

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
 Frame = -3

Query: 737 VSGTVXFDQQDEKSP----VVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSA--GAHFNPE 576
           + GTV F Q    +     + ++G  + L+   H   V   G+    C +   G  ++P+
Sbjct: 66  IRGTVTFTQSSPNTSTNIKLALTGVNETLSWQIHDLPVIYKGNAATTCNTVALGNLYDPD 125

Query: 575 KQDHGGPSSAVRH---VGDL-GNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVV 417
                  S+A +    VGDL G    I+ + ++ V   DS + L G + I GRTLV+
Sbjct: 126 GTATAQCSAAQKKSCAVGDLRGKFGFIDGNNMSSV-FHDSNLPLTGRHGIFGRTLVL 181


>SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)
          Length = 661

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 364 LVMLVAVLLVESLAWPRFKYIHFSYVGLGTTIFSD 260
           +++++A L VE   W  F+ I+F ++ L T  F D
Sbjct: 366 MLLVLAALAVEYEGWTYFQGIYFGFITLSTIGFGD 400


>SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1604

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 740 DVSGTVXFDQQDEKSPVVVSGEVQGLTKGKHG--FHVHEFGDNTN 612
           DVSG+V  +Q   +S   V+  V G     HG  F +H    NT+
Sbjct: 44  DVSGSVTLEQSQSRSGPYVTVAVDGTRVVLHGAVFTIHNLTSNTD 88


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 617  TNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIED 501
            T+  +SA  HF+    DH  P S V    D+  +E+  +
Sbjct: 3205 TSASSSAKVHFSNAASDHDEPQSPVNAFHDMKTLESFSE 3243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,167,252
Number of Sequences: 59808
Number of extensions: 483098
Number of successful extensions: 1111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)