Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I03
         (763 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloropla...   187   8e-48
At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) / ...   184   6e-47
At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/z...   171   6e-43
At1g12520.1 68414.m01449 superoxide dismutase copper chaperone, ...    52   4e-07
At5g59980.1 68418.m07522 RNase P subunit p30 family protein cont...    32   0.36 
At5g18330.1 68418.m02157 U-box domain-containing protein weak si...    31   0.63 
At4g04920.1 68417.m00715 expressed protein                             31   0.84 
At4g34300.1 68417.m04875 glycine-rich protein similar to auxin r...    31   1.1  
At1g18560.1 68414.m02315 hAT dimerisation domain-containing prot...    31   1.1  
At3g22250.1 68416.m02812 UDP-glucoronosyl/UDP-glucosyl transfera...    29   3.4  
At1g34060.1 68414.m04222 alliinase family protein contains Pfam ...    29   4.5  
At5g01360.1 68418.m00049 expressed protein several hypothetical ...    28   5.9  
At3g16810.1 68416.m02147 pumilio/Puf RNA-binding domain-containi...    28   7.8  
At1g55540.1 68414.m06356 proline-rich family protein contains pr...    28   7.8  
At1g47786.1 68414.m05316 acyl-protein thioesterase-related simil...    28   7.8  

>At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloroplast
           (SODCP) / copper/zinc superoxide dismutase (CSD2)
           identical to GP:3273753:AF061519
          Length = 216

 Score =  187 bits (455), Expect = 8e-48
 Identities = 90/152 (59%), Positives = 102/152 (67%), Gaps = 2/152 (1%)
 Frame = -3

Query: 761 AVCVLRG--DVSGTVXFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAH 588
           AV VL+G  DV G V   Q D+  P  V+  + GLT G HGFH+HEFGD TNGC S G H
Sbjct: 67  AVAVLKGTSDVEGVVTLTQ-DDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPH 125

Query: 587 FNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHAD 408
           FNP    HG P    RH GDLGNI A  D GV + +I D+QI L GPNS++GR  VVH  
Sbjct: 126 FNPNNMTHGAPEDECRHAGDLGNINANAD-GVAETTIVDNQIPLTGPNSVVGRAFVVHEL 184

Query: 407 PDDLGLGGHELSKTTGNAGGRIACGVIGLAKI 312
            DDLG GGHELS TTGNAGGR+ACGVIGL  +
Sbjct: 185 KDDLGKGGHELSLTTGNAGGRLACGVIGLTPL 216


>At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) /
           copper/zinc superoxide dismutase (CSD1) identical to
           SWISS-PROT: P24704
          Length = 152

 Score =  184 bits (448), Expect = 6e-47
 Identities = 85/139 (61%), Positives = 97/139 (69%)
 Frame = -3

Query: 737 VSGTVXFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGG 558
           V+GT+ F Q+ +     VSG V GL  G HGFHVH  GD TNGC S G HFNP+ + HG 
Sbjct: 14  VTGTIFFTQEGD-GVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGA 72

Query: 557 PSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHE 378
           P  A RH GDLGNI  + D G    +I D QI L GPNSI+GR +VVHADPDDLG GGHE
Sbjct: 73  PEDANRHAGDLGNI-TVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDDLGKGGHE 131

Query: 377 LSKTTGNAGGRIACGVIGL 321
           LS  TGNAGGR+ACG+IGL
Sbjct: 132 LSLATGNAGGRVACGIIGL 150


>At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/zinc
           superoxide dismutase (CSD3) identical to copper/zinc
           superoxide dismutase GI:3273755
          Length = 164

 Score =  171 bits (415), Expect = 6e-43
 Identities = 82/149 (55%), Positives = 102/149 (68%), Gaps = 2/149 (1%)
 Frame = -3

Query: 761 AVCVLRGD--VSGTVXFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAH 588
           AV ++ GD  V G + F  QD      V+G++ GL+ G HGFH+H FGD TNGC S G H
Sbjct: 10  AVALIAGDNNVRGCLQF-VQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPH 68

Query: 587 FNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHAD 408
           FNP  + HG P+   RH GDLGNI A   +GV ++ I+D  I L G  SI+GR +VVHAD
Sbjct: 69  FNPLNRVHGPPNEEERHAGDLGNILA-GSNGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127

Query: 407 PDDLGLGGHELSKTTGNAGGRIACGVIGL 321
           PDDLG GGH+LSK+TGNAG R+ CG+IGL
Sbjct: 128 PDDLGKGGHKLSKSTGNAGSRVGCGIIGL 156


>At1g12520.1 68414.m01449 superoxide dismutase copper chaperone,
           putative similar to copper chaperone for superoxide
           dismutase [Homo sapiens] gi|2431868|gb|AAC51764
          Length = 254

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
 Frame = -3

Query: 761 AVCVLRG-DVSGTVXFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHF 585
           AV   +G D+ G V F Q   +    +     GL+ G H + ++E+GD TNG  S G+ +
Sbjct: 98  AVAEFKGPDIFGVVRFAQVSMEL-ARIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLY 156

Query: 584 NPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADP 405
           NP  QD  G       +GDLG +EA + +G    S +  ++ +     +IGR +VV+   
Sbjct: 157 NP-FQDQTG----TEPLGDLGTLEA-DKNGEAFYSGKKEKLKV---ADLIGRAVVVYKTD 207

Query: 404 DD 399
           D+
Sbjct: 208 DN 209


>At5g59980.1 68418.m07522 RNase P subunit p30 family protein
           contains Pfam PF01876: RNase P subunit p30
          Length = 581

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -3

Query: 605 TSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVS 480
           TS G   +P K DHG P S V  V ++GN    E++ V + S
Sbjct: 458 TSEGGSMSPSKSDHGIPQSPV-EVNNMGNAAFEEEASVDENS 498


>At5g18330.1 68418.m02157 U-box domain-containing protein weak
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582198; contains Pfam
           profile PF04564: U-box domain
          Length = 445

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -1

Query: 595 ELISTLKNKIMVVPVLLYAMSATSVTLRQLKTLESLKYQSKIPRS 461
           E I TL NKIM+ P+L+    A+  T  +   LE LK++   PR+
Sbjct: 68  EFICTLSNKIMIEPMLI----ASGQTFEKSYILEWLKHERTCPRT 108


>At4g04920.1 68417.m00715 expressed protein 
          Length = 1250

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +3

Query: 252  TMKSLNIVVPSPT*EKCMYLNLGQANDSTSNTATSITSGLT*LMA-TQSQVIRVSMDN*S 428
            T  + +   P    +K +YL +GQ   +T+ TAT+ +SG + + A  Q  + ++S  N  
Sbjct: 853  TQNASSPATPQVFPDKSLYLAVGQPTTTTTTTATTNSSGSSHVQAWMQGAIAKISSSNDG 912

Query: 429  ATNDA 443
            + + A
Sbjct: 913  SNSTA 917


>At4g34300.1 68417.m04875 glycine-rich protein similar to auxin
           response factor 30 (GI:20145855) {Arabidopsis thaliana}
          Length = 313

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/67 (29%), Positives = 23/67 (34%)
 Frame = -3

Query: 641 HVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQI 462
           H    G   NG +S   H +     H G SS   H    G+      SG    SI  S  
Sbjct: 89  HSSGTGSTHNGHSSGSNHSSGTGSTHNGHSSGSNHSSSTGSTHNNHSSGSNHSSIVGSTH 148

Query: 461 SLHGPNS 441
             HG  S
Sbjct: 149 KNHGSGS 155


>At1g18560.1 68414.m02315 hAT dimerisation domain-containing protein
           / BED zinc finger domain-containing protein /
           transposase-related weak similarity to Tam3-transposase
           [Antirrhinum majus] GI:16064; contains Pfam profiles
           PF02892: BED zinc finger, PF05699: hAT family
           dimerisation domain
          Length = 676

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 449 PNSIIGRTLVVHADPDDLGLGGHELSKT 366
           P +++  TLV H+DP D+GLG  + S +
Sbjct: 3   PKAMMDMTLVPHSDPIDIGLGSSDKSNS 30


>At3g22250.1 68416.m02812 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 461

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = -3

Query: 584 NPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHG------PNSII 435
           N   +++ G +  + H+G L N EA  +  +TK S  +  +S  G      PNS+I
Sbjct: 231 NDLNKENNGQNPQILHLGPLHNQEATNNITITKTSFWEEDMSCLGWLQEQNPNSVI 286


>At1g34060.1 68414.m04222 alliinase family protein contains Pfam
           profiles: PF04864 allinase C-terminal domain, PF04863
           alliinase EGF-like domain
          Length = 463

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 422 VVHADPDDLGLGGHELSKTTGNAGGRIACGVI 327
           + H   +DL L    LSKTTG+AG R   G++
Sbjct: 270 ITHPVDEDLSL--FSLSKTTGHAGSRFGWGLV 299


>At5g01360.1 68418.m00049 expressed protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 434

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +1

Query: 466 WESWIDTLVTPESSIASMLPRSPT-WRTAELGPP--*SCFSGLK 588
           W +W+D+ V P  +       SPT  R+A+ G P    CF+  K
Sbjct: 298 WANWVDSTVDPNKTRVFFTTMSPTHTRSADWGKPNGTKCFNETK 341


>At3g16810.1 68416.m02147 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile:PF00806 Pumilio-family RNA
           binding domains
          Length = 641

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -3

Query: 746 RGDVSGTVXFDQQDEKSPVVVSGEVQGLTKGKHG 645
           R D   +  FD    K P +VSGE Q   K K G
Sbjct: 14  RKDTDSSAKFDSLKSKKPKLVSGEQQQHVKPKFG 47


>At1g55540.1 68414.m06356 proline-rich family protein contains
           proline rich extensin domain, INTERPRO:IPR002965
          Length = 915

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 25/99 (25%), Positives = 43/99 (43%)
 Frame = +3

Query: 162 FTIRWTNITIKDTGFFIYVGEI*TKISIQNTMKSLNIVVPSPT*EKCMYLNLGQANDSTS 341
           F++  T+ T+  TGF +  G+  T + +     + +   PSP        NL   + S+ 
Sbjct: 386 FSVTSTS-TVSATGFNVPFGKPLTSVKVDLNQAAPSTPSPSPGPTAGFTFNLPALSPSSP 444

Query: 342 NTATSITSGLT*LMATQSQVIRVSMDN*SATNDAVRSMK 458
              +S T G + L    +   +VS D  SAT+    S +
Sbjct: 445 EMVSSST-GQSSLFPPSAPTSQVSSDQASATSSLTDSSR 482


>At1g47786.1 68414.m05316 acyl-protein thioesterase-related similar
           to hypothetical protein GB:AAD55623 GI:5903064 from
           [Arabidopsis thaliana] contains similarity to
           acyl-protein thioesterase-1 [Homo sapiens]
           gi|9965372|gb|AAG10063
          Length = 186

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -3

Query: 557 PSSAVRHVGDLGNIEAIEDSGVTKVS--IQDSQISLHGPNSIIGRTLVVHADPDDLGLG 387
           P++  R V  LG +E      + ++S  +QD ++SLH     I      HA P+  G+G
Sbjct: 89  PTAPRRPVTILGGMETNAWFDIAEISENMQDDEVSLHHAALSIANLFSDHASPNIGGMG 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,195,696
Number of Sequences: 28952
Number of extensions: 339917
Number of successful extensions: 819
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)