BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P01_pT_I02 (523 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_01_0597 + 4438858-4439847,4439936-4440067,4440397-4441176,444... 32 0.32 05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 30 0.98 02_01_0660 - 4913033-4913368 28 5.2 05_06_0237 + 26618195-26618425,26618518-26618640,26619569-266197... 27 6.9 09_04_0239 + 15954995-15956242 27 9.1 04_04_0978 - 29856872-29858023 27 9.1 02_02_0605 - 12078473-12079054 27 9.1 >07_01_0597 + 4438858-4439847,4439936-4440067,4440397-4441176, 4441359-4441646,4441710-4441808 Length = 762 Score = 31.9 bits (69), Expect = 0.32 Identities = 19/65 (29%), Positives = 29/65 (44%) Frame = -3 Query: 308 CTVAALNARRTTNVHTARFAVLIRATPSRVQSRLLTAEAPGALANTQPAERAFTVRTSSA 129 CTVAA+ R + A + + RLL A AP A A Q + + V+T + Sbjct: 71 CTVAAVRLRADALTNEAYADITLDPVADHDVPRLLPAPAPAAAAGGQQQQLRYFVKTLMS 130 Query: 128 TPTKY 114 + +Y Sbjct: 131 SDAEY 135 >05_05_0230 - 23476919-23477372,23477656-23477695,23478578-23478700, 23479114-23479151,23479289-23479674,23479875-23481053, 23481805-23481928,23482733-23482779 Length = 796 Score = 30.3 bits (65), Expect = 0.98 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Frame = -3 Query: 290 NARRTTNVHTARFAVLIR-ATPSRVQSRLLTAEAPGALANTQPAERAFTVRTSSATPTK 117 ++ RT ++T+ +V R TPSR S ++ + A + PA + V+T +TPTK Sbjct: 92 SSNRTAVLNTSISSVSSRPTTPSRRSSTVVAPKQSIAASRPVPARSSTPVKTRPSTPTK 150 >02_01_0660 - 4913033-4913368 Length = 111 Score = 27.9 bits (59), Expect = 5.2 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -2 Query: 342 EAAGTCPLPSKVYGCSPKCKEDYECTH 262 +AA P PSK +GC+P +D C H Sbjct: 40 DAAAAAPAPSKGHGCNP--LKDKTCRH 64 >05_06_0237 + 26618195-26618425,26618518-26618640,26619569-26619736, 26619824-26621497 Length = 731 Score = 27.5 bits (58), Expect = 6.9 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = -2 Query: 414 KKNKMGSMTFLLGVFALVTFVFYAEAAGTCPLP 316 +++ G M FL+ V ALVTFV + + A +C +P Sbjct: 363 RRSLFGYMGFLVAV-ALVTFVGFVKGAISCYIP 394 >09_04_0239 + 15954995-15956242 Length = 415 Score = 27.1 bits (57), Expect = 9.1 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = -3 Query: 353 SSTPKPLA-RALFLRKCTVAALNARRTTNVHTAR 255 +ST P+A R R+CT+ A +TT++H R Sbjct: 354 TSTSSPMAKRRRRRRRCTLHGAGAEKTTSMHALR 387 >04_04_0978 - 29856872-29858023 Length = 383 Score = 27.1 bits (57), Expect = 9.1 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = -2 Query: 210 AAYGGGTGSSSKHATG 163 AAYGGG GS +H G Sbjct: 101 AAYGGGAGSGGRHGHG 116 >02_02_0605 - 12078473-12079054 Length = 193 Score = 27.1 bits (57), Expect = 9.1 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = +1 Query: 16 IKSINXLIT**NLIYLCLSSAAFHSLRYWITLAYFVGVALD 138 +K+IN L+ N+ L L H L YW T + LD Sbjct: 117 LKNINELVEEMNMFGLLLQDEPVHQLPYWQTYSVLPSNELD 157 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,929,609 Number of Sequences: 37544 Number of extensions: 255551 Number of successful extensions: 837 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 803 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 836 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1142636160 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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