Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I02
         (523 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48730.1 68418.m06031 pentatricopeptide (PPR) repeat-containi...    27   5.8  
At5g59900.1 68418.m07512 pentatricopeptide (PPR) repeat-containi...    27   7.7  

>At5g48730.1 68418.m06031 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 495

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 203 TAEAPGALANTQPAERAFTVRTSSATP 123
           T+ AP    N + AER FTVR  S +P
Sbjct: 8   TSHAPPLPTNRRTAERTFTVRCISISP 34


>At5g59900.1 68418.m07512 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 907

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 377 VCSRWLPLSSTPKPLARALFLRKCTVAALNARRTTNVHTARFAVLIRAT 231
           +CS+  P+SS P  +    FL   T   ++ ++   +H A    L+  T
Sbjct: 739 LCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANT 787


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,286,615
Number of Sequences: 28952
Number of extensions: 196794
Number of successful extensions: 560
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)