Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H24
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit (...    28   7.5  
At5g54170.1 68418.m06745 expressed protein weak similarity to SP...    27   9.9  

>At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit
           (IRX1) nearly identical to gi:12836997
          Length = 985

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -3

Query: 491 LSRKKYINLIMPVYESRALHAYCVSVVIRILNKFL*VTNLLNY*NIHYVRQQGLFVSV 318
           L R  YIN I+  + S  L AYC    I +L     +  L N  ++ ++   GLF+S+
Sbjct: 752 LQRLAYINTIVYPFTSLPLVAYCTLPAICLLTGKFIIPTLSNLASMLFL---GLFISI 806


>At5g54170.1 68418.m06745 expressed protein weak similarity to
           SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP)
           {Homo sapiens}
          Length = 449

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -1

Query: 586 CQTKSVPAQYESPNNTQCRICLMK*IWCI 500
           C TK V      PNN Q R+ L    WCI
Sbjct: 255 CVTKGVSVPSIPPNNKQKRVDLFYSSWCI 283


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,027,040
Number of Sequences: 28952
Number of extensions: 269079
Number of successful extensions: 461
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)