SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H23
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    52   7e-08
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    40   3e-04
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    39   5e-04
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    38   0.001
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    38   0.001
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    38   0.001
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    37   0.003
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    37   0.003
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    36   0.007
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    31   0.11 
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    31   0.11 
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    31   0.11 
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    31   0.19 
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    31   0.19 
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    30   0.25 
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom...    30   0.33 
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    29   0.44 
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    29   0.44 
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc...    29   0.77 
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    29   0.77 
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    28   1.3  
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    28   1.3  
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    27   1.8  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    27   1.8  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   1.8  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    27   2.3  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    27   2.3  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    27   3.1  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      27   3.1  
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    25   7.2  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    25   7.2  
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    25   7.2  
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz...    25   9.5  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   9.5  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    25   9.5  

>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 52.0 bits (119), Expect = 7e-08
 Identities = 26/80 (32%), Positives = 41/80 (51%)
 Frame = -3

Query: 505 KNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLW 326
           K+ G   ++ RSD K+  + GWDG  R++S  ++ PL VL  H   I  +A+        
Sbjct: 295 KHCGQQNIRIRSDNKILATAGWDGRGRVYSCQTLAPLAVLKYHSDGINSLAFHP------ 348

Query: 325 KAYIMAAGGLDGAITLWDLY 266
            + ++A    D  I+LW LY
Sbjct: 349 GSNVIALASKDTRISLWKLY 368


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 3/139 (2%)
 Frame = -3

Query: 610 LEQQRGIIGNASNVIQIFNLGRKDLSLTLKLDVTIKNPGINKV---KTRSDGKVFTSGGW 440
           LE  R ++G  +  I ++++   + +    L  TI N    +V       DG  F SGG 
Sbjct: 283 LETNRLLVGKGNGNIFVYDIIWSESTSKAVLVATITNAHDEQVCGLTWNHDGSQFASGGN 342

Query: 439 DGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYNS 260
           D  + +F    +R  + + +   A++ +++   + SL       AG  D  I  ++ +N 
Sbjct: 343 DNRVCLFKGSDLRQPLYVWQQNAAVKALSFCPWQRSL---LATGAGSHDKHIRFYNCFNG 399

Query: 259 KQ*NDQIMLYCDLQVMICH 203
           K+ ++   LYC  Q+   H
Sbjct: 400 KKIDE---LYCGAQITSIH 415


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 24/76 (31%), Positives = 38/76 (50%)
 Frame = -3

Query: 496 GINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAY 317
           GI  +  + DG + +SGG D   RI+   S + ++VL EH + I  +A+S         Y
Sbjct: 309 GIFSIACQPDGSLVSSGGNDAIGRIWDLRSGKSIMVLDEHIRQIVAMAWSP------NGY 362

Query: 316 IMAAGGLDGAITLWDL 269
            +A    D  + +WDL
Sbjct: 363 QLATSSADDTVKIWDL 378



 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/69 (21%), Positives = 28/69 (40%)
 Frame = -3

Query: 469 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 290
           +G    +   D  ++I+    +     +  H   + DV Y    V+ +    +A  G DG
Sbjct: 360 NGYQLATSSADDTVKIWDLRKVSLAHTIPAHSSLVSDVRYIESGVNRF----IATSGYDG 415

Query: 289 AITLWDLYN 263
            + LW+  N
Sbjct: 416 CVKLWNPLN 424


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 23/72 (31%), Positives = 36/72 (50%)
 Frame = -3

Query: 469 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 290
           +GK   SG  D  IRIF   S + L +L  H+  I+ V ++ EK+         +GG DG
Sbjct: 398 NGKFIVSGSSDLTIRIFEASSGKLLRMLQGHEDLIRTVRFNDEKI--------VSGGYDG 449

Query: 289 AITLWDLYNSKQ 254
            + +W+    +Q
Sbjct: 450 TVRIWNFNTGEQ 461


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = -3

Query: 496 GINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTE-HKQAIQDVAYSTEKVSLWKA 320
           G+  V    DGK    GG D  + I+S F +R LV   + HK  + DV +   +      
Sbjct: 366 GLTCVTWSPDGKFIAIGGKDDLVSIYS-FPLRKLVARCQGHKSWVTDVIFDAWRCD-DDN 423

Query: 319 YIMAAGGLDGAITLWD 272
           Y +A+ GLD  + LWD
Sbjct: 424 YRIASVGLDRKLLLWD 439


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 19/75 (25%), Positives = 39/75 (52%)
 Frame = -3

Query: 493 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYI 314
           ++ ++  SDG+   +G  DG I+++   S   +V  T+H  A+  + +S       +  +
Sbjct: 342 LSTLQYSSDGQRIITGADDGKIKVWDMNSGFCIVTFTQHTSAVSGLCFSK------RGNV 395

Query: 313 MAAGGLDGAITLWDL 269
           + +  LDG++  WDL
Sbjct: 396 LFSSSLDGSVRAWDL 410



 Score = 34.3 bits (75), Expect = 0.015
 Identities = 19/80 (23%), Positives = 34/80 (42%)
 Frame = -3

Query: 493 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYI 314
           ++ +   S G +  SG WD  +RI+  FS   +V        +  +A+  +         
Sbjct: 470 VSSLSFNSSGSLLASGSWDKTVRIWDIFSRSGIVEPLPIPSDVLSLAFHPDGKE------ 523

Query: 313 MAAGGLDGAITLWDLYNSKQ 254
           +    LDG +T W++   KQ
Sbjct: 524 VCVASLDGQLTFWNVQEGKQ 543


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
 Frame = -3

Query: 439 DGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYNS 260
           D  IRI++W S   + +LT H   +   A+   +       ++ +  LD  + +WD+   
Sbjct: 116 DQTIRIWNWQSRNCIAILTGHSHYVMCAAFHPSE------DLIVSASLDQTVRVWDISGL 169

Query: 259 KQ*N-DQIMLYCDLQVMICHSLCQFCLYTSTNALIDYIFRQH 137
           +  N   + +  + Q+   H+     L+ ST+A++ ++   H
Sbjct: 170 RMKNAAPVSMSLEDQLAQAHNSISNDLFGSTDAIVKFVLEGH 211


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = -3

Query: 475 RSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGG- 299
           RSDG    SGG D  ++I+   S  P    T H  A++ VA+       W++ ++A GG 
Sbjct: 313 RSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP-----WQSNLLATGGG 367

Query: 298 -LDGAITLWD 272
            +D  I  W+
Sbjct: 368 TMDKQIHFWN 377


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
 Frame = -3

Query: 562 IFNLGRKDLSLTLKLDVTIKNPG---INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLV 392
           +FN+    L +TL  + + K  G   +  V    DGK   +G  D  IRI+     R   
Sbjct: 312 VFNVETGKL-ITLLQEESSKREGDLYVRSVAFSPDGKYLATGVEDQQIRIWDIAQKRVYR 370

Query: 391 VLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYNSKQ 254
           +LT H+Q I  + +S +  +L       +G  D  + LWD+   +Q
Sbjct: 371 LLTGHEQEIYSLDFSKDGKTL------VSGSGDRTVCLWDVEAGEQ 410


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = -3

Query: 469 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 290
           DG+   SG   G+   + W + + +  L  H   +Q +A+  ++ S     +  +  +DG
Sbjct: 497 DGRFVFSGDSSGNACFWDWKTCKLMAKLPAHSGPVQSMAFHPQETS----KVATSSIVDG 552

Query: 289 AITLWD 272
           +I  WD
Sbjct: 553 SIKYWD 558


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 23/66 (34%), Positives = 35/66 (53%)
 Frame = -3

Query: 451 SGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWD 272
           SGG+DG IR++      P V+   H +AI DV    +  S     +++AGG   +I +WD
Sbjct: 182 SGGYDGTIRLWDTRIADPEVMSFSHGEAI-DVVLPMQSGST----VISAGG--PSIKVWD 234

Query: 271 LYNSKQ 254
           L   +Q
Sbjct: 235 LVAGRQ 240



 Score = 27.9 bits (59), Expect = 1.3
 Identities = 24/107 (22%), Positives = 50/107 (46%)
 Frame = -3

Query: 592 IIGNASNVIQIFNLGRKDLSLTLKLDVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSW 413
           + G+A+ ++QIF+L  +  S+   LD       + +    ++   F SG  D  ++++  
Sbjct: 97  LAGDATGLVQIFDLSTR--SILRALDAHQFPVHVTQFCPYAN-TTFLSGSDDKTVKVWDL 153

Query: 412 FSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWD 272
            +      L+ H+  ++  ++ +       A  + +GG DG I LWD
Sbjct: 154 STGAVQYDLSGHEDYVRTASWMS-------ATRLVSGGYDGTIRLWD 193



 Score = 25.8 bits (54), Expect = 5.4
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = -3

Query: 625 SVDYHLEQQRG--IIGNASNVIQIFNLGRKDLSLTLKLDVTIKNPGINKVKTRSDGKVFT 452
           ++D  L  Q G  +I      I++++L     + T KL    K+  I  +   S+     
Sbjct: 209 AIDVVLPMQSGSTVISAGGPSIKVWDLVAGRQTPTKKLSNHQKS--ITCLAMNSENTRLL 266

Query: 451 SGGWDGHIRIFS 416
           SGG DGH++I++
Sbjct: 267 SGGLDGHVKIYN 278


>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 19/70 (27%), Positives = 29/70 (41%)
 Frame = -3

Query: 469 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 290
           D   F S GWD  ++++   +         H   +  V  S +        + A+GG DG
Sbjct: 161 DNLTFVSAGWDKAVKVWDLETFSLRTSHYGHTGYVSAVTISPD------GSLCASGGRDG 214

Query: 289 AITLWDLYNS 260
            + LWDL  S
Sbjct: 215 TLMLWDLNES 224


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = -3

Query: 460 VFTSGGWDGHIRIFSWFSMRPLV-VLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAI 284
           V +SGG D HI      +      VLT H+Q +  + +++ +       ++A+GG D A+
Sbjct: 345 VLSSGGRDNHILHRDVRAPEHYFRVLTAHRQEVCGLEWNSNE------NLLASGGNDNAL 398

Query: 283 TLWDLYNSK 257
            +WD +  K
Sbjct: 399 MVWDKFEEK 407



 Score = 29.5 bits (63), Expect = 0.44
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -3

Query: 472 SDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGG-- 299
           S+  +  SGG D  + ++  F  +PL     H  A++ + +S  +       I+A+GG  
Sbjct: 384 SNENLLASGGNDNALMVWDKFEEKPLYSFHNHIAAVKAITWSPHQRG-----ILASGGGT 438

Query: 298 LDGAITLWD 272
            D  I LW+
Sbjct: 439 ADRTIKLWN 447


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = -3

Query: 466 GKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGA 287
           G +  SG WD  +RI++      L +L  H + I  V+ S +        + A    DG 
Sbjct: 150 GTLLVSGSWDETVRIWNLQDGTCLRMLPAHSEPIISVSISAD------GTLCATASYDGM 203

Query: 286 ITLWDLYNSK 257
             +WD+ + +
Sbjct: 204 ARIWDVLSGQ 213


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
 Frame = -3

Query: 475 RSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGG- 299
           RS G++  SGG D ++ ++ + S RPL    EH  A++ + +S  +       I+A+GG 
Sbjct: 259 RSLGQL-ASGGNDNNLFVWDYRSSRPLHKFEEHTAAVKAIGWSPHQRG-----ILASGGG 312

Query: 298 -LDGAITL 278
            +D  +T+
Sbjct: 313 TIDRCLTI 320


>SPAC25H1.08c |||ribosome biogenesis protein
           Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 399

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = -3

Query: 469 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 290
           DG    +GG D  +R+  W S      +T  +   + V  S       K   +AAG  DG
Sbjct: 115 DGTYIATGGMDSQVRL--WKSSTGFEFITAFETVDEIVWLSWHP----KGLFLAAGCNDG 168

Query: 289 AITLWDLYNSK 257
           +I +W L + K
Sbjct: 169 SIWMWSLPSGK 179


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 17/82 (20%), Positives = 35/82 (42%)
 Frame = -3

Query: 493 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYI 314
           +  V    DG    S   +G I ++   + R +  +  H+  I  +++S E        +
Sbjct: 508 VTAVAIAPDGHTMASADSEGLIHLWDIGTGRRIKTMRGHRGNIYSLSFSREST------V 561

Query: 313 MAAGGLDGAITLWDLYNSKQ*N 248
           + +GG D  +  WD++ +   N
Sbjct: 562 LVSGGSDCTVRAWDVFKTNYNN 583


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 23/84 (27%), Positives = 39/84 (46%)
 Frame = -3

Query: 520 LDVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTE 341
           L  T+K+     ++  ++G    SG  +G + I+   +     VLT H +AIQ V +S+ 
Sbjct: 18  LTTTLKHGHATSIRFSTNGYHLASGLVNGSVVIWDLSTFSVSRVLTGHTRAIQSVCWSS- 76

Query: 340 KVSLWKAYIMAAGGLDGAITLWDL 269
                  +++ A   D    LWDL
Sbjct: 77  ----CDRFLLTA-SRDWKCILWDL 95


>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 304 GGLDGAITLWDLYNS 260
           GG+DGAI +WDL N+
Sbjct: 195 GGIDGAIKIWDLRNN 209


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 12/96 (12%)
 Frame = -3

Query: 520 LDVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRP--LVVLTEH---KQAIQDV 356
           L+ T     IN     + G + TS G D   + F W S +P   + L +H   K    D 
Sbjct: 482 LNFTTTQKDINHATISNSGILVTSSGTDN--QTFVWDSRKPDKPLSLLKHGKTKMIHFDG 539

Query: 355 AYSTE-----KVSLW--KAYIMAAGGLDGAITLWDL 269
           A   E      ++ W  K  +   GG DG + +WDL
Sbjct: 540 ANEEEVDAGINMAQWQPKGNLFVTGGSDGIVKVWDL 575



 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 496 GINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVV-LTEHKQAIQDVAYSTEKVSL 329
           GIN  + +  G +F +GG DG ++++      P +   TE   AI    +S +   L
Sbjct: 548 GINMAQWQPKGNLFVTGGSDGIVKVWDLRLNNPFIQNFTEMNSAITYGGFSEDASKL 604


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = -3

Query: 451 SGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWD 272
           SG  D  IRI+   + +PL+VL  +   I        K+           G DG++ LWD
Sbjct: 604 SGSADSTIRIWDLNTGKPLMVLPSNSGYISSFVSDEHKI---------ISGNDGSVKLWD 654

Query: 271 LYNSK 257
           +   K
Sbjct: 655 VRTGK 659


>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 316 IMAAGGLDGAITLWDLYNSKQ*NDQIML 233
           +M +GG + +I +WDL N  Q  D+ ++
Sbjct: 62  LMVSGGANSSINVWDLQNIDQKEDEDLI 89


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/68 (23%), Positives = 29/68 (42%)
 Frame = -3

Query: 472 SDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLD 293
           +DG    S    G I+++   S    V   +H   +  +++S +        I+ +GG D
Sbjct: 539 ADGLSLASADESGIIKVWDLRSSNQHVSFVKHSSIVYSLSFSYDNK------ILVSGGAD 592

Query: 292 GAITLWDL 269
             +  WDL
Sbjct: 593 TDVNFWDL 600


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 469 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAY 350
           DG++   GG  GHI  F W + + L  L   ++ ++DV +
Sbjct: 112 DGRMILLGGRKGHISAFDWRTGKLLTEL-HLRETVRDVKW 150


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
 Frame = -3

Query: 520 LDVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFS------WFSMR 401
           + ++++   +N + +  DG++F SG  D ++  FS      WFS R
Sbjct: 175 IQISVQGINVNCIVSSEDGRIFFSGNKDPNLYEFSYQLEEGWFSRR 220


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 23/104 (22%), Positives = 46/104 (44%)
 Frame = -3

Query: 580 ASNVIQIFNLGRKDLSLTLKLDVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMR 401
           A+NV  +   G+K  +L  +     ++  +  +    DGK   +G  D  I+++   + +
Sbjct: 335 AANVFDV-QTGKKLFTLHEESPDPSRDLYVRTIAFSPDGKYLVTGTEDRQIKLWDLSTQK 393

Query: 400 PLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDL 269
              V + H+Q I  + +S         +I++  G D    LWD+
Sbjct: 394 VRYVFSGHEQDIYSLDFSHN-----GRFIVSGSG-DRTARLWDV 431


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = -3

Query: 469 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 290
           D     SG  D  IRI+   S + L  L+ H + +  VAY+         Y  A+ G D 
Sbjct: 439 DDTFVLSGSEDDKIRIWHRESGKLLATLSGHVKCVNYVAYNPV-----DPYQFASAGDDN 493

Query: 289 AITLW 275
            + +W
Sbjct: 494 TVRIW 498


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/48 (39%), Positives = 27/48 (56%)
 Frame = -3

Query: 397 LVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYNSKQ 254
           L  + EH   ++ V  S  K S  K+ ++A+GGLD  I +WD YN  Q
Sbjct: 116 LSTIGEHTDYVKRV--SIPKYS--KSPLVASGGLDKRIIVWD-YNVGQ 158


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 605 TAKRNHRQCFKCDT 564
           + K+ H QCFKCDT
Sbjct: 274 SGKKLHPQCFKCDT 287


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 460 VFTSGGWDGHIRIF 419
           +F SG WDG+IR++
Sbjct: 425 LFASGSWDGNIRLW 438


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = +3

Query: 399 GLIENHENIRMCPSQPPLVNTLPSLRVFTLLMPGFLIVTSNLRVKLKSFLPKLNICITFE 578
           GL E+HENIR  P         P  R+  L +    ++   L +    F+ K    +  +
Sbjct: 68  GLFESHENIRFYPIPSLPAYLQPKNRLQFLFLGPLKVLHQFLALNWALFVRKPASFLFIQ 127

Query: 579 ALPMIPL 599
             P IP+
Sbjct: 128 NPPCIPV 134


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 493 INKVKTRSDGKVFTSGGWDGHIRIFS 416
           I+ +   SDG +  +G WD  +R++S
Sbjct: 277 ISSLALTSDGTMLATGSWDECVRLWS 302


>SPAC4D7.05 |sum1|tif34|translation initiation factor
           eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 493 INKVKTRSDGKVFTSGGWDGHIRI 422
           IN +     G  + SGG DG++R+
Sbjct: 291 INTIAVHPKGTGYASGGEDGYVRV 314


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 586  GNASNVIQIFNLGRKDLSLTLKLDV 512
            GN SNVI   N+G   +++ + LDV
Sbjct: 1716 GNNSNVINTLNVGISTVNIDIWLDV 1740


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 23/90 (25%), Positives = 40/90 (44%)
 Frame = -3

Query: 586 GNASNVIQIFNLGRKDLSLTLKLDVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFS 407
           G+  N ++I+N+  + L  TL          I  V+      +++S  +D  IRI+    
Sbjct: 245 GSKDNTVRIWNVKLRTLLFTLSGHTA----PITCVRWGGQNWIYSSS-YDKTIRIWDAKD 299

Query: 406 MRPLVVLTEHKQAIQDVAYSTEKVSLWKAY 317
            + L +L  H   +  ++ STE V    AY
Sbjct: 300 GKCLHILKGHAARVNHLSLSTEHVLRSGAY 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,557,865
Number of Sequences: 5004
Number of extensions: 50282
Number of successful extensions: 198
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -