Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_H23
(651 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15) 41 8e-04
SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_4548| Best HMM Match : WD40 (HMM E-Value=6.7e-35) 36 0.038
SB_762| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.050
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0) 35 0.050
SB_5480| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.087
SB_9416| Best HMM Match : WD40 (HMM E-Value=0) 34 0.12
SB_13379| Best HMM Match : WD40 (HMM E-Value=1.3e-39) 34 0.12
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41) 31 1.1
SB_42943| Best HMM Match : WD40 (HMM E-Value=0) 30 1.9
SB_5139| Best HMM Match : WD40 (HMM E-Value=8.5e-27) 30 1.9
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_15799| Best HMM Match : PH (HMM E-Value=0.76) 29 2.5
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 29 2.5
SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22) 28 5.7
SB_53276| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07) 28 5.7
SB_32324| Best HMM Match : WD40 (HMM E-Value=6.4e-21) 28 5.7
SB_44731| Best HMM Match : WD40 (HMM E-Value=1.1e-11) 28 7.6
SB_57418| Best HMM Match : WD40 (HMM E-Value=4.5e-15) 28 7.6
SB_52095| Best HMM Match : tRNA-synt_2c (HMM E-Value=0) 28 7.6
SB_29619| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)
Length = 1277
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = -3
Query: 598 RGIIGNASNVIQIFNLGRKDLSLTLKLDVTIKNPGINKVKTRSDGKVFTSGGWDGHIR 425
+ + G+A N + I G D L+ +V +K G+ VK R D ++ SG WDG R
Sbjct: 107 KAVTGSADNKLSITTFGL-DGQLSSTGEVQLKTEGVASVKVRCDSRILASGAWDGRGR 163
>SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = -3
Query: 472 SDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLD 293
+DGK+ S WD + I + +P+ L H + A++ E+ I+ +G D
Sbjct: 11 NDGKLLASASWDKFVIISDVPTGKPVNTLAGHTTGVWTCAFNPERT----GDILCSGADD 66
Query: 292 GAITLWDL 269
G++ LWD+
Sbjct: 67 GSLKLWDI 74
>SB_4548| Best HMM Match : WD40 (HMM E-Value=6.7e-35)
Length = 844
Score = 35.5 bits (78), Expect = 0.038
Identities = 26/113 (23%), Positives = 45/113 (39%)
Frame = -3
Query: 592 IIGNASNVIQIFNLGRKDLSLTLKLDVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSW 413
I+G ++ + I++L + K ++T P + D KV S DG+I ++
Sbjct: 399 IVGGEASTLTIWDLASSQPRI--KAELTSNAPACYALAMSPDSKVCFSCCSDGNIAVWDL 456
Query: 412 FSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYNSKQ 254
+ + H + S + LW GGLD + WDL +Q
Sbjct: 457 HNQTLVRQFQGHTDGASCIDISPDGTKLW------TGGLDNTVRSWDLREGRQ 503
>SB_762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 202
Score = 35.1 bits (77), Expect = 0.050
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Frame = -3
Query: 586 GNASNVIQIFNL--GRKDLSLTLKLDVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSW 413
G+ S + + NL G+K+ SL + T+ + DG G DG I IF
Sbjct: 82 GSHSGKVNLINLELGKKESSLDTRGKFTMS------LAYSPDGHYIACGAIDGIINIFDL 135
Query: 412 FSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYNSKQ 254
+ + L L H I+ + +S + + ++ DG I ++D+Y SKQ
Sbjct: 136 TTNKLLHTLEGHAMPIRSLTFSPD------SQLLITASDDGHIKMYDVYPSKQ 182
>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
Length = 1127
Score = 35.1 bits (77), Expect = 0.050
Identities = 23/74 (31%), Positives = 38/74 (51%)
Frame = -3
Query: 460 VFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAIT 281
+ G +G + ++S S PLV + H+ +Q +A +K L+ MA GLDG +
Sbjct: 628 IINLGHHNGTVTMWSPSSPDPLVKMLCHRGPVQAIAI--DKQGLY----MATTGLDGQMK 681
Query: 280 LWDLYNSKQ*NDQI 239
+WD+ KQ N +
Sbjct: 682 MWDVRTYKQLNSYL 695
>SB_5480| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 34.3 bits (75), Expect = 0.087
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Frame = -3
Query: 508 IKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMR---PLVVLTEHKQAIQDVAYSTEK 338
I P ++ V +G+ G DG I+IFS+ + P L +H++A+ V + +
Sbjct: 193 INPPFVHSVHVPGNGRKVAVGLEDGSIQIFSFEGKKNIAPWARLKKHRRAVCQVHFP--R 250
Query: 337 VSLWKAYIMAAGGLDGAITLWDLYNSKQ*N 248
++ +GG D I +W L+N + N
Sbjct: 251 FGSLGDNVLISGGNDEHIIVWKLWNRQSEN 280
>SB_9416| Best HMM Match : WD40 (HMM E-Value=0)
Length = 700
Score = 33.9 bits (74), Expect = 0.12
Identities = 25/119 (21%), Positives = 51/119 (42%)
Frame = -3
Query: 625 SVDYHLEQQRGIIGNASNVIQIFNLGRKDLSLTLKLDVTIKNPGINKVKTRSDGKVFTSG 446
++ Y R ++I+ +N+ + + + + +N + +GK S
Sbjct: 35 ALQYDKSNGRLYSAGRDSIIRCWNVRNERIKDPYMVSLEHHTDWVNDIVLCRNGKTILSA 94
Query: 445 GWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDL 269
D ++++ + L HK +Q +AY++ K +A+GGLD I LWD+
Sbjct: 95 SSDTTVKVWDATRGFCMSTLRTHKDYVQALAYASCKEH------VASGGLDKQIFLWDV 147
>SB_13379| Best HMM Match : WD40 (HMM E-Value=1.3e-39)
Length = 574
Score = 33.9 bits (74), Expect = 0.12
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = -3
Query: 520 LDVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTE-HKQAIQDVAYST 344
L + + N N V + DGK F SG DG IR+F S + +++ H + + V ++
Sbjct: 212 LRIVVPNVTCNTVDIQKDGKAFVSGWDDGKIRVFRPESGQLFYEISDAHSKGVTAVIVNS 271
Query: 343 EKVSLWKAYIMAAGGLDGAITLWD 272
+ +GG +G + +W+
Sbjct: 272 TCSKI------VSGGGEGQVRVWE 289
>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1649
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = -3
Query: 469 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 290
D K +GG DG IR++ + + + L L +H + + +A S A + +G D
Sbjct: 717 DTKKIITGGADGSIRVWDYETGKELNKLLDHTKLVYTLALSPH------ADFLVSGAFDH 770
Query: 289 AITLWDL 269
+ +WD+
Sbjct: 771 TVKIWDM 777
>SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)
Length = 1487
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/75 (22%), Positives = 34/75 (45%)
Frame = -3
Query: 493 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYI 314
+N + DG +GG DG +++++ + V EH ++ V +S +
Sbjct: 1254 MNVLAYSPDGNYIATGGDDGKVKLWNTMTGFCFVTFHEHSASVTAVTFSP------NGQV 1307
Query: 313 MAAGGLDGAITLWDL 269
+ + LDG + +DL
Sbjct: 1308 VLSASLDGTVRAFDL 1322
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = -3
Query: 460 VFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAIT 281
V SG WD +R+++ F + V E DV + +A LDGA+T
Sbjct: 1393 VLISGAWDKTVRLWNVFESK---VSRETLNLTSDVVSIAVRPD---GREVAISSLDGALT 1446
Query: 280 LWDL 269
WDL
Sbjct: 1447 FWDL 1450
>SB_42943| Best HMM Match : WD40 (HMM E-Value=0)
Length = 273
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Frame = -3
Query: 562 IFNLGRKDLSLTL-KLDVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVL 386
++ L R D + K +T N ++ V SDG+ SG WD +R++ +
Sbjct: 79 VWELTRDDANYGFAKKSLTGHNHFVSDVVMSSDGQFALSGSWDKTLRLWDLNAGVTTRRF 138
Query: 385 TEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWD 272
H + + VA+S + + +G D I LW+
Sbjct: 139 VGHTKDVLSVAFSADNRQI------VSGARDHHIKLWN 170
>SB_5139| Best HMM Match : WD40 (HMM E-Value=8.5e-27)
Length = 855
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -3
Query: 496 GINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEK 338
GI V +DGK+ G G++RI+ M+ ++ H+ + V +S K
Sbjct: 590 GIKTVAISADGKLLAVGDKIGNVRIYDTVHMKERYKISAHESEVLCVEFSPLK 642
>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1803
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = -3
Query: 472 SDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLD 293
SDG + TSG D +R++ + L H + VAYS + +W +A+ D
Sbjct: 1468 SDGALLTSGSRDRTVRVWDCAAAEKLKKARFHSERCWSVAYSDD--GMW----LASASDD 1521
Query: 292 GAITLWDL 269
+ +W++
Sbjct: 1522 FKVCVWNM 1529
>SB_15799| Best HMM Match : PH (HMM E-Value=0.76)
Length = 836
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -3
Query: 619 DYHLEQQRGIIGNASNVIQIFNLGRKDLSLTLKLDVTIKNPGINKVKTRSD 467
D + EQQ GN + + + LGR+D T++ T+K+ G K+K S+
Sbjct: 173 DRYQEQQYETCGNEARIEDLSVLGRRDNHYTME---TLKHKGGTKIKCMSN 220
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -3
Query: 619 DYHLEQQRGIIGNASNVIQIFNLGRKDLSLTLKLDVTIKNPGINKVKTRSD 467
D + EQQ GN + + + LGR+D T++ T+K+ G K+K S+
Sbjct: 47 DRYQEQQYETCGNEARIEDLSVLGRRDNHYTME---TLKHKGGTKIKCMSN 94
>SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/73 (21%), Positives = 36/73 (49%)
Frame = -3
Query: 472 SDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLD 293
S G+V +GG D + +++ ++ L H ++ V +++ + ++ AG
Sbjct: 29 STGRVMVTGGEDRKVNMWAVGQPNVIMSLAGHTSPVECVQFNSGE------DLVVAGSQS 82
Query: 292 GAITLWDLYNSKQ 254
G + +WDL +K+
Sbjct: 83 GTLKIWDLEAAKR 95
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = -3
Query: 634 CPMSVDYHLEQQRGIIGNASNVIQIFNLGRKDLSLTLKLDVTIKNPG--INKVKTRSDGK 461
C + V H R + G+ S++ + D + LD +K +N ++ DG+
Sbjct: 135 CTVFVQVHTVL-RTLTGHKSSIRSLDFHPFGDFVASGSLDTNLKGHTDCVNHLRFSPDGR 193
Query: 460 VFTSGGWDGHIRIFSW 413
SGG DG +++ W
Sbjct: 194 WIISGGEDGAAKVYGW 209
>SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)
Length = 874
Score = 28.3 bits (60), Expect = 5.7
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -3
Query: 301 GLDGAITLWDLYNSKQ*NDQIMLYC 227
G+DGA+ W++YN K+ + ++ C
Sbjct: 293 GMDGAVYEWNVYNYKREGESVLKSC 317
>SB_53276| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 424
Score = 28.3 bits (60), Expect = 5.7
Identities = 8/17 (47%), Positives = 15/17 (88%)
Frame = -3
Query: 319 YIMAAGGLDGAITLWDL 269
+++AAGG DG +++WD+
Sbjct: 211 HLLAAGGQDGVLSIWDM 227
>SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07)
Length = 711
Score = 28.3 bits (60), Expect = 5.7
Identities = 8/17 (47%), Positives = 15/17 (88%)
Frame = -3
Query: 319 YIMAAGGLDGAITLWDL 269
+++AAGG DG +++WD+
Sbjct: 35 HLLAAGGQDGVLSIWDM 51
>SB_32324| Best HMM Match : WD40 (HMM E-Value=6.4e-21)
Length = 123
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = -3
Query: 562 IFNLGRKDLSLTL-KLDVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVL 386
++ L R D + K +T N ++ V SDG+ SG WD +R++ +
Sbjct: 42 VWELTRDDANYGFAKKSLTGHNHFVSDVVMSSDGQFALSGSWDKTLRLWDLNAGVTTRRF 101
Query: 385 TEHKQAIQDVAYSTE 341
H + + VA+S +
Sbjct: 102 VGHTKDVLSVAFSAD 116
>SB_44731| Best HMM Match : WD40 (HMM E-Value=1.1e-11)
Length = 256
Score = 27.9 bits (59), Expect = 7.6
Identities = 8/15 (53%), Positives = 14/15 (93%)
Frame = -3
Query: 316 IMAAGGLDGAITLWD 272
++A+GG+DGA+ +WD
Sbjct: 195 LLASGGMDGAVRVWD 209
>SB_57418| Best HMM Match : WD40 (HMM E-Value=4.5e-15)
Length = 365
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/64 (25%), Positives = 26/64 (40%)
Frame = -3
Query: 460 VFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAIT 281
+ ++ D + + SW +P+ + I V + S + AA D IT
Sbjct: 247 MISTNAHDADVNVISWNRGQPVALFKHSTGPITSVEWHPTDGS-----VFAASSADNQIT 301
Query: 280 LWDL 269
LWDL
Sbjct: 302 LWDL 305
>SB_52095| Best HMM Match : tRNA-synt_2c (HMM E-Value=0)
Length = 756
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 376 KQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYN 263
K+ +DV + V + Y++ G L+GAI + D N
Sbjct: 585 KEGDEDVEFRVINVQVHGGYVLHVGALEGAIRVGDTMN 622
>SB_29619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 745
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -3
Query: 601 QRGIIGNASNVIQIFNLGRKDLSLTLKLDVTIKNPGINKVKTRSDGKV 458
Q ++GNA +I+N D++ L + ++ NP IN +DGK+
Sbjct: 383 QDQVVGNARKYEEIYNK-INDINNVLDVYISSLNPDINADLKTADGKI 429
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,517,646
Number of Sequences: 59808
Number of extensions: 342493
Number of successful extensions: 814
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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