Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H23
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.63 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.9  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   7.8  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 364 ELPVYVL*GLLRASLRTMKIYECVHPSLRS*ILYHHSVSS 483
           ELP ++   L ++ +  M++ +  HP+ +     HH+ SS
Sbjct: 378 ELPKHLPTSLTKSKMEVMELSDLHHPNCKINRKVHHTTSS 417


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -2

Query: 122 SYY-VQIYVEALYCVGVMWPSY 60
           SYY +QIY+     V V W S+
Sbjct: 242 SYYLIQIYIPCCMLVIVSWVSF 263


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -2

Query: 122 SYY-VQIYVEALYCVGVMWPSY 60
           SYY +QIY+     V V W S+
Sbjct: 242 SYYLIQIYIPCCMLVIVSWVSF 263


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +3

Query: 522 LRVKLKSFLPKL 557
           +R+KLK F+P+L
Sbjct: 221 MRMKLKQFMPRL 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,060
Number of Sequences: 438
Number of extensions: 3406
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)