Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_H23
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g29860.1 68417.m04250 transducin family protein / WD-40 repea... 73 2e-13
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 42 4e-04
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 40 0.002
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 40 0.002
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 37 0.010
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 37 0.013
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 37 0.013
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 36 0.023
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 35 0.041
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 35 0.054
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 34 0.071
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 34 0.071
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 34 0.094
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 33 0.12
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 33 0.12
At5g50650.1 68418.m06276 WD-40 repeat family protein / St12p pro... 33 0.16
At5g50550.1 68418.m06260 WD-40 repeat family protein / St12p pro... 33 0.16
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ... 32 0.29
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 32 0.29
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 32 0.38
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 32 0.38
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 31 0.50
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 31 0.50
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 31 0.50
At5g52250.1 68418.m06485 transducin family protein / WD-40 repea... 31 0.66
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea... 31 0.66
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 31 0.66
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 31 0.66
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 31 0.88
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 31 0.88
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 31 0.88
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 30 1.2
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 30 1.2
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 30 1.2
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 30 1.2
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 30 1.5
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 30 1.5
At2g30910.2 68415.m03768 transducin family protein / WD-40 repea... 29 2.0
At2g30910.1 68415.m03767 transducin family protein / WD-40 repea... 29 2.0
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 29 2.7
At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-rel... 29 2.7
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 29 3.5
At3g53390.1 68416.m05892 transducin family protein / WD-40 repea... 29 3.5
At3g10530.1 68416.m01264 transducin family protein / WD-40 repea... 29 3.5
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 29 3.5
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 29 3.5
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 29 3.5
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 29 3.5
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 29 3.5
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 28 4.7
At4g24805.1 68417.m03553 expressed protein 28 4.7
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 28 4.7
At1g24130.1 68414.m03044 transducin family protein / WD-40 repea... 28 4.7
At2g31300.1 68415.m03821 transducin family protein / WD-40 repea... 28 6.2
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 28 6.2
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 28 6.2
At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pf... 27 8.2
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 27 8.2
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 27 8.2
At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochro... 27 8.2
At1g52730.2 68414.m05959 transducin family protein / WD-40 repea... 27 8.2
At1g52730.1 68414.m05958 transducin family protein / WD-40 repea... 27 8.2
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 27 8.2
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 27 8.2
>At4g29860.1 68417.m04250 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); WDVCF
variant 1 (gi:12006981) [Mus musculus]
Length = 386
Score = 72.5 bits (170), Expect = 2e-13
Identities = 34/110 (30%), Positives = 58/110 (52%)
Frame = -3
Query: 595 GIIGNASNVIQIFNLGRKDLSLTLKLDVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFS 416
GI G A + I ++NL S T++ ++T++ PG++ R DGK+ + GWD IR+++
Sbjct: 277 GISGGADDKIVMYNLNHSTGSCTIRKEITLERPGVSGTSIRVDGKIAATAGWDHRIRVYN 336
Query: 415 WFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLY 266
+ L +L H+ V+YS + +MA+ D + LW LY
Sbjct: 337 YRKGNALAILKYHRATCNAVSYSPD------CELMASASEDATVALWKLY 380
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/79 (29%), Positives = 39/79 (49%)
Frame = -3
Query: 484 VKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAA 305
+K D + SGG D + +++ S +P++ LTEH A++ + +S + SL +
Sbjct: 304 LKWSHDDRELASGGNDNQLLVWNNHSQQPILKLTEHTAAVKAITWSPHQSSLLAS---GG 360
Query: 304 GGLDGAITLWDLYNSKQ*N 248
G D I W+ N Q N
Sbjct: 361 GTADRCIRFWNTTNGNQLN 379
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 39.5 bits (88), Expect = 0.002
Identities = 27/120 (22%), Positives = 55/120 (45%)
Frame = -3
Query: 628 MSVDYHLEQQRGIIGNASNVIQIFNLGRKDLSLTLKLDVTIKNPGINKVKTRSDGKVFTS 449
+SVD+H + G+ ++I+++ +K T K G+N ++ DG+ S
Sbjct: 105 ISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTR----GVNVLRFTPDGRWVVS 160
Query: 448 GGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDL 269
GG D ++++ + + L H+ IQ + + + +++A G D + WDL
Sbjct: 161 GGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHE------FLLATGSADRTVKFWDL 214
Score = 36.3 bits (80), Expect = 0.018
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = -3
Query: 475 RSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGL 296
R +V +GG D + +++ ++ L H I V + +V ++AAG
Sbjct: 26 RKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEV------LVAAGAA 79
Query: 295 DGAITLWDLYNSK 257
G I LWDL +K
Sbjct: 80 SGTIKLWDLEEAK 92
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 39.5 bits (88), Expect = 0.002
Identities = 27/120 (22%), Positives = 55/120 (45%)
Frame = -3
Query: 628 MSVDYHLEQQRGIIGNASNVIQIFNLGRKDLSLTLKLDVTIKNPGINKVKTRSDGKVFTS 449
+SVD+H + G+ ++I+++ +K T K G+N ++ DG+ S
Sbjct: 105 ISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTR----GVNVLRFTPDGRWVVS 160
Query: 448 GGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDL 269
GG D ++++ + + L H+ IQ + + + +++A G D + WDL
Sbjct: 161 GGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHE------FLLATGSADRTVKFWDL 214
Score = 36.3 bits (80), Expect = 0.018
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = -3
Query: 475 RSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGL 296
R +V +GG D + +++ ++ L H I V + +V ++AAG
Sbjct: 26 RKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEV------LVAAGAA 79
Query: 295 DGAITLWDLYNSK 257
G I LWDL +K
Sbjct: 80 SGTIKLWDLEEAK 92
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 37.1 bits (82), Expect = 0.010
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = -3
Query: 472 SDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLD 293
SDGK+ S G D ++ +M+P L EH I D+ +S ++ L A D
Sbjct: 661 SDGKMLASAGHDKKAVLWYTDTMKPKTTLEEHTAMITDIRFSPSQLRL------ATSSFD 714
Query: 292 GAITLWDLYN 263
+ +WD N
Sbjct: 715 KTVRVWDADN 724
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 36.7 bits (81), Expect = 0.013
Identities = 26/120 (21%), Positives = 55/120 (45%)
Frame = -3
Query: 628 MSVDYHLEQQRGIIGNASNVIQIFNLGRKDLSLTLKLDVTIKNPGINKVKTRSDGKVFTS 449
+SV++H + G+ ++I+++ +K T K G+N ++ DG+ S
Sbjct: 198 VSVNFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTR----GVNVLRFTPDGRWIVS 253
Query: 448 GGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDL 269
GG D ++++ + + L H+ IQ + + + +++A G D + WDL
Sbjct: 254 GGEDNVVKVWDLTAGKLLHEFKSHEGKIQSLDFHPHE------FLLATGSADKTVKFWDL 307
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = -3
Query: 475 RSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGL 296
R +V +GG D + +++ ++ L H I V + + ++AAG
Sbjct: 119 RKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEG------LVAAGAA 172
Query: 295 DGAITLWDLYNSK 257
G I LWDL +K
Sbjct: 173 SGTIKLWDLEEAK 185
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 36.7 bits (81), Expect = 0.013
Identities = 20/79 (25%), Positives = 39/79 (49%)
Frame = -3
Query: 496 GINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAY 317
G+ + S+ + SG DG + I + + + + L H +++ V +S ++ A
Sbjct: 244 GLTCLDINSNSSLAISGSKDGSVHIVNIVTGKVVSSLNSHTDSVECVKFSPSSATIPLA- 302
Query: 316 IMAAGGLDGAITLWDLYNS 260
A GG+D + +WDL +S
Sbjct: 303 --ATGGMDKKLIIWDLQHS 319
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 35.9 bits (79), Expect = 0.023
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = -3
Query: 469 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 290
DG+ SG DG I ++ + R + L H + ++YS E ++A+G D
Sbjct: 552 DGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWSLSYSGE------GSLLASGSADC 605
Query: 289 AITLWDLYNS 260
+ LWD+ +S
Sbjct: 606 TVKLWDVTSS 615
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 35.1 bits (77), Expect = 0.041
Identities = 26/86 (30%), Positives = 38/86 (44%)
Frame = -3
Query: 451 SGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWD 272
S WD +++++ + + L H + VA S + + A+GG DG I LWD
Sbjct: 168 SASWDKTVKVWNLQNCKLRNTLAGHSGYLNTVAVSPD------GSLCASGGKDGVILLWD 221
Query: 271 LYNSKQ*NDQIMLYCDLQVMICHSLC 194
L K+ LY I HSLC
Sbjct: 222 LAEGKK------LYSLEAGSIIHSLC 241
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -3
Query: 493 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTE 341
+ V SDG+ SG WDG +R++ + H + + VA+ST+
Sbjct: 66 VQDVVLSSDGQFALSGSWDGELRLWDLATGESTRRFVGHTKDVLSVAFSTD 116
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 34.7 bits (76), Expect = 0.054
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = -3
Query: 484 VKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAA 305
+K SD + SGG D + +++ S +P++ EH A++ +A+S L +
Sbjct: 298 LKWSSDNRELASGGNDNKLFVWNQHSTQPVLRFCEHAAAVKAIAWSPHHFGLLAS---GG 354
Query: 304 GGLDGAITLWD 272
G D I W+
Sbjct: 355 GTADRCIRFWN 365
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 34.3 bits (75), Expect = 0.071
Identities = 26/86 (30%), Positives = 38/86 (44%)
Frame = -3
Query: 451 SGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWD 272
S WD +++++ + + L H + VA S + + A+GG DG I LWD
Sbjct: 168 SASWDKTVKVWNLQNCKLRNSLVGHSGYLNTVAVSPD------GSLCASGGKDGVILLWD 221
Query: 271 LYNSKQ*NDQIMLYCDLQVMICHSLC 194
L K+ LY I HSLC
Sbjct: 222 LAEGKK------LYSLEAGSIIHSLC 241
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -3
Query: 493 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTE 341
+ V SDG+ SG WDG +R++ + H + + VA+ST+
Sbjct: 66 VEDVVLSSDGQFALSGSWDGELRLWDLATGETTRRFVGHTKDVLSVAFSTD 116
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 34.3 bits (75), Expect = 0.071
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Frame = -3
Query: 538 LSLTLKLDVTIKNPGINKVKTRS---DGKVFTSGGWDGHIRIFS----WFSMRPLVVLTE 380
LS T + + PG V T + DGK G DG I+I+S W S + V
Sbjct: 312 LSQTQVIKPKLARPGRVPVTTCAWDRDGKRIAGGVGDGSIQIWSLKPGWGSRPDIYVGKA 371
Query: 379 HKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYNSKQ 254
H I V +S++ I+ + DG++ +WDL K+
Sbjct: 372 HTDDITSVKFSSD------GRILLSRSFDGSLKVWDLRQMKE 407
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 33.9 bits (74), Expect = 0.094
Identities = 23/86 (26%), Positives = 38/86 (44%)
Frame = -3
Query: 451 SGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWD 272
S WD +++++ + + L H + VA S + + A+GG DG + LWD
Sbjct: 169 SASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPD------GSLCASGGKDGVVLLWD 222
Query: 271 LYNSKQ*NDQIMLYCDLQVMICHSLC 194
L K+ LY + H+LC
Sbjct: 223 LAEGKK------LYSLEANSVIHALC 242
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -3
Query: 493 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTE 341
+ V SDG+ SG WDG +R++ + H + + VA+S +
Sbjct: 66 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD 116
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/48 (31%), Positives = 31/48 (64%)
Frame = -3
Query: 403 RPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYNS 260
R + LT H +A+ + +ST V +++A+ GLDGA+ +W+++++
Sbjct: 151 RMSISLTGHTKAVTAIDWSTSHV-----HLLASAGLDGAVYVWNVWSN 193
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 33.5 bits (73), Expect = 0.12
Identities = 27/123 (21%), Positives = 53/123 (43%)
Frame = -3
Query: 625 SVDYHLEQQRGIIGNASNVIQIFNLGRKDLSLTLKLDVTIKNPGINKVKTRSDGKVFTSG 446
SV ++ E+ + G +S VI++++L + T + V+ G+ SG
Sbjct: 12 SVAFNSEEVLVLAGASSGVIKLWDLEESKMVRAF----TGHRSNCSAVEFHPFGEFLASG 67
Query: 445 GWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLY 266
D ++R++ + H + I + +S + W + +GGLD + +WDL
Sbjct: 68 SSDTNLRVWDTRKKGCIQTYKGHTRGISTIEFSPD--GRW----VVSGGLDNVVKVWDLT 121
Query: 265 NSK 257
K
Sbjct: 122 AGK 124
>At5g50650.1 68418.m06276 WD-40 repeat family protein / St12p
protein, putative contains 4 WD-40 repeats (PF0400);
similar to St12p protein GI:166878 [Arabidopsis
thaliana]
Length = 383
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = -3
Query: 469 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYS 347
DG V +G DG +R+F W SM+ L+ ++ +++ + +S
Sbjct: 153 DGTVLATGAEDGTLRVFEWPSMKTLLNESKTHASVKSLTFS 193
>At5g50550.1 68418.m06260 WD-40 repeat family protein / St12p
protein, putative contains 4 WD-40 repeats (PF0400);
similar to St12p protein GI:166878 [Arabidopsis
thaliana]
Length = 383
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = -3
Query: 469 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYS 347
DG V +G DG +R+F W SM+ L+ ++ +++ + +S
Sbjct: 153 DGTVLATGAEDGTLRVFEWPSMKTLLNESKTHASVKSLTFS 193
>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to fizzy-related
protein (GI:5813825) Drosophila melanogaster,
PID:g2326419;
Length = 518
Score = 32.3 bits (70), Expect = 0.29
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = -3
Query: 484 VKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAA 305
+K D + SGG D + +++ S +P++ +EH A++ +A+S L +
Sbjct: 341 LKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYSEHTAAVKAIAWSPHVHGLLAS---GG 397
Query: 304 GGLDGAITLWD 272
G D I W+
Sbjct: 398 GTADRCIRFWN 408
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 32.3 bits (70), Expect = 0.29
Identities = 20/75 (26%), Positives = 35/75 (46%)
Frame = -3
Query: 493 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYI 314
++ V RSDG +F + G +++F L L H + V Y + K ++
Sbjct: 96 VSSVCFRSDGALFAACDLSGVVQVFDIKERMALRTLRSHSAPARFVKYPVQD----KLHL 151
Query: 313 MAAGGLDGAITLWDL 269
++ GG DG + WD+
Sbjct: 152 VS-GGDDGVVKYWDV 165
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 31.9 bits (69), Expect = 0.38
Identities = 20/78 (25%), Positives = 32/78 (41%)
Frame = -3
Query: 502 NPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWK 323
N +N++ G F G + + S+ S++PL LT H +A K
Sbjct: 149 NYEVNEIAWNMPGDFFFLTTGLGTVEVLSYPSLKPLDTLTAHTAGCYCIAIDP------K 202
Query: 322 AYIMAAGGLDGAITLWDL 269
A G D ++LWD+
Sbjct: 203 GRYFAVGSADSLVSLWDI 220
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 31.9 bits (69), Expect = 0.38
Identities = 24/116 (20%), Positives = 49/116 (42%)
Frame = -3
Query: 616 YHLEQQRGIIGNASNVIQIFNLGRKDLSLTLKLDVTIKNPGINKVKTRSDGKVFTSGGWD 437
Y ++ I G+ + +++++ + + K+ + ++ + + +G D
Sbjct: 112 YPIDTGMFITGSFDHYVKVWDTNTSQVVVDFKMPGKVYRTAMSSMAMSHT--LIAAGTDD 169
Query: 436 GHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDL 269
+R+ S L+ H+ + V +ST S W Y GG DGAI WD+
Sbjct: 170 VQVRLCDIASGAFSHTLSGHRDGVMSVEWSTS--SEWVLY---TGGCDGAIRFWDI 220
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 31.5 bits (68), Expect = 0.50
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -3
Query: 469 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 290
DGK SG D +R++ ++ PL HK + VA+S + L +G G
Sbjct: 120 DGKQLASGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAWSPDGKHL------VSGSKSG 173
Query: 289 AITLWD 272
I W+
Sbjct: 174 EICCWN 179
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 31.5 bits (68), Expect = 0.50
Identities = 31/124 (25%), Positives = 58/124 (46%)
Frame = -3
Query: 625 SVDYHLEQQRGIIGNASNVIQIFNLGRKDLSLTLKLDVTIKNPGINKVKTRSDGKVFTSG 446
+VD++ + + + + +I++ G TL D +NP ++ V+ +GK G
Sbjct: 160 AVDFNRDGSLIVSSSYDGLCRIWDSGTGHCVKTLIDD---ENPPVSFVRFSPNGKFILVG 216
Query: 445 GWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLY 266
D +R+++ S + L T H A Q S V+ K + +G D + +W+L
Sbjct: 217 TLDNTLRLWNISSAKFLKTYTGHVNA-QYCISSAFSVTNGKRIV--SGSEDNCVHMWEL- 272
Query: 265 NSKQ 254
NSK+
Sbjct: 273 NSKK 276
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 31.5 bits (68), Expect = 0.50
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = -3
Query: 511 TIKNPG--INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEK 338
TI+ P +N+++ D K + + + HIR+F S P V+T +A +
Sbjct: 30 TIQYPDSHVNRLEITPD-KHYLAAACNPHIRLFDVNSNSPQPVMTYDSHTNNVMAVGFQC 88
Query: 337 VSLWKAYIMAAGGLDGAITLWDL 269
+ W M +G DG + +WDL
Sbjct: 89 DAKW----MYSGSEDGTVKIWDL 107
>At5g52250.1 68418.m06485 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to photomorphogenesis repressor PnCOP1
(GI:11127996) [Ipomoea nil]
Length = 385
Score = 31.1 bits (67), Expect = 0.66
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = -3
Query: 493 INKVKTRSD--GKVFTSGGWDGHIRIFSWFSMRPLVVLTEHK-QAIQDVAYSTEKVSLWK 323
++ +K R D G+V SG +DG + + P+ EH + I V Y+ SL
Sbjct: 124 LSSLKWRPDFSGRVIGSGDYDGVVTEYDVEKQVPVSERDEHGGRRIWSVDYTLYNGSL-- 181
Query: 322 AYIMAAGGLDGAITLWDLYN 263
I A+G DG + +WD N
Sbjct: 182 --IGASGSDDGTVQMWDPRN 199
>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 544
Score = 31.1 bits (67), Expect = 0.66
Identities = 19/79 (24%), Positives = 39/79 (49%)
Frame = -3
Query: 493 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYI 314
IN + +DG + G DG++RIF + + + + + + A+ A+S + Y+
Sbjct: 306 INSIAFSNDGAYLATVGRDGYLRIFDFSTQKLVCGVKSYYGALLCCAWSMD-----GKYL 360
Query: 313 MAAGGLDGAITLWDLYNSK 257
+ GG D + +W + + K
Sbjct: 361 L-TGGEDDLVQVWSMEDRK 378
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 31.1 bits (67), Expect = 0.66
Identities = 24/119 (20%), Positives = 56/119 (47%)
Frame = -3
Query: 625 SVDYHLEQQRGIIGNASNVIQIFNLGRKDLSLTLKLDVTIKNPGINKVKTRSDGKVFTSG 446
+V++H + G++ ++I+++ +K T K + GI+ ++ DG+ SG
Sbjct: 105 AVEFHPFGEFLASGSSDANLKIWDIRKKGCIQTYKGH----SRGISTIRFTPDGRWVVSG 160
Query: 445 GWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDL 269
G D ++++ + + L H+ I+ + + + +++A G D + WDL
Sbjct: 161 GLDNVVKVWDLTAGKLLHEFKFHEGPIRSLDFHPLE------FLLATGSADRTVKFWDL 213
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/70 (22%), Positives = 31/70 (44%)
Frame = -3
Query: 466 GKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGA 287
G+ SG D +++I+ + H + I + ++ + W + +GGLD
Sbjct: 112 GEFLASGSSDANLKIWDIRKKGCIQTYKGHSRGISTIRFTPD--GRW----VVSGGLDNV 165
Query: 286 ITLWDLYNSK 257
+ +WDL K
Sbjct: 166 VKVWDLTAGK 175
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 31.1 bits (67), Expect = 0.66
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 388 LTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDL 269
L+ H+ + V +ST S W Y GG DGAI WD+
Sbjct: 186 LSGHRDGVMSVEWSTS--SEWVLY---TGGCDGAIRFWDI 220
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 30.7 bits (66), Expect = 0.88
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = -3
Query: 526 LKLDVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYS 347
LK + K+P ++ K +GK D +++ ++ + + L V T H + +
Sbjct: 205 LKTLIDDKSPAVSFAKFSPNGKFILVATLDSTLKLSNYATGKFLKVYTGHTNKVFCI--- 261
Query: 346 TEKVSLWKAYIMAAGGLDGAITLWDL 269
T S+ + +G D + LWDL
Sbjct: 262 TSAFSVTNGKYIVSGSEDNCVYLWDL 287
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 30.7 bits (66), Expect = 0.88
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3
Query: 373 QAIQDVAYSTEKVSLWKAY-IMAAGGLDGAITLWDLYNSKQ 254
+A +D+ Y ++ Y A GG DG + +WD N K+
Sbjct: 235 EAGRDIVYPVNSIAFHPIYGTFATGGCDGFVNIWDGNNKKR 275
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 30.7 bits (66), Expect = 0.88
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -3
Query: 475 RSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGL 296
+ DG + S G D R++ + R ++V H + + V +S Y +A+GG
Sbjct: 390 QQDGALAASCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPN------GYHLASGGE 443
Query: 295 DGAITLWDL 269
D +WDL
Sbjct: 444 DNQCRIWDL 452
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 493 INKVKTRSDGKVFTSGGWDGHIRI 422
IN + DGK F+SGG DG++R+
Sbjct: 293 INALAFNPDGKSFSSGGEDGYVRL 316
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 493 INKVKTRSDGKVFTSGGWDGHIRI 422
IN + DGK F+SGG DG++R+
Sbjct: 293 INALAFNPDGKSFSSGGEDGYVRL 316
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = -3
Query: 463 KVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAI 284
++ S WD +R++ F+ + V H + VA+ + L A+ LDG I
Sbjct: 490 QLLASSSWDYTVRLWDVFASKGTVETFRHNHDVLTVAFRPDGKQL------ASSTLDGQI 543
Query: 283 TLWD 272
WD
Sbjct: 544 NFWD 547
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = -3
Query: 463 KVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAI 284
++ S WD +R++ F+ + V H + VA+ + L A+ LDG I
Sbjct: 530 QLLASSSWDYTVRLWDVFASKGTVETFRHNHDVLTVAFRPDGKQL------ASSTLDGQI 583
Query: 283 TLWD 272
WD
Sbjct: 584 NFWD 587
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 493 INKVKTRSDGKVFTSGGWDGHIRI 422
IN + DGK F+SGG DG++R+
Sbjct: 320 INALAFSPDGKSFSSGGEDGYVRL 343
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 364 QDVAYSTEKVSLWKAY-IMAAGGLDGAITLWDLYNSKQ 254
+D+ Y ++ Y A+GG DG + +WD N K+
Sbjct: 237 RDIVYPVNAIAFHPIYGTFASGGCDGFVNIWDGNNKKR 274
>At2g30910.2 68415.m03768 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -3
Query: 379 HKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYNSKQ 254
H I + S K K + GLDG + +WDL N +Q
Sbjct: 332 HDNCINSIV-SLSKAGSPKVMRFSTSGLDGKVAIWDLENMEQ 372
>At2g30910.1 68415.m03767 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -3
Query: 379 HKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYNSKQ 254
H I + S K K + GLDG + +WDL N +Q
Sbjct: 332 HDNCINSIV-SLSKAGSPKVMRFSTSGLDGKVAIWDLENMEQ 372
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = -3
Query: 451 SGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWD 272
S G+D R++ + R +++ H + + V +S Y +A+GG D +WD
Sbjct: 147 SSGFDSLARVWDLRTARNILIFQGHIKQVLSVDFSPN------GYHLASGGEDNQCRIWD 200
Query: 271 L 269
L
Sbjct: 201 L 201
>At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-related
contains Pfam PF00400: WD domain, G-beta repeat; similar
to Lipopolysaccharide-responsive and beige-like anchor
protein (CDC4-like protein) (Beige-like protein)
(SP:P50851) [Homo sapiens}
Length = 1280
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/60 (23%), Positives = 25/60 (41%)
Frame = -3
Query: 448 GGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDL 269
G W+ + S R + + HK + VA + + I+A G D + +WD+
Sbjct: 1022 GNWENSFHVISLTDGRVVQSIRHHKDVVSCVAVTADST------ILATGSYDTTVMVWDI 1075
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = -3
Query: 472 SDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLD 293
+DG F S G DG +++++ + + +H+ + +A K ++A GG D
Sbjct: 593 TDGTQFVSCGADGLLKLWNVNTSECIATYDQHEDKVWALAVGK------KTEMIATGGGD 646
Query: 292 GAITLW 275
I LW
Sbjct: 647 AVINLW 652
>At3g53390.1 68416.m05892 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 558
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/79 (24%), Positives = 38/79 (48%)
Frame = -3
Query: 493 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYI 314
IN + +DG + G DG++RIF + + + + + A+ ++S + YI
Sbjct: 306 INSIAFSNDGAHLATVGRDGYLRIFDFLTQKLVCGGKSYYGALLCCSWSMD-----GKYI 360
Query: 313 MAAGGLDGAITLWDLYNSK 257
+ GG D + +W + + K
Sbjct: 361 L-TGGEDDLVQVWSMEDRK 378
>At3g10530.1 68416.m01264 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400); BING4
(gi:3811380) {Mus musculus]; similar to hypothetical
protein GB:P40055 [Saccharomyces cerevisiae]
Length = 536
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/63 (23%), Positives = 33/63 (52%)
Frame = -3
Query: 538 LSLTLKLDVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQD 359
LS + D+ + + G K+ + G+ +GG GH+ + +M L+ + ++ ++D
Sbjct: 105 LSSRNQYDIVLPDFGPYKLDFTASGRHMLAGGRKGHLALLDMMNM-SLIKEIQVRETVRD 163
Query: 358 VAY 350
VA+
Sbjct: 164 VAF 166
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -3
Query: 469 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 290
DGK+ S G D + I++ +++ EH I DV + L A D
Sbjct: 519 DGKLLASAGHDKKVFIWNMETLQVESTPEEHAHIITDVRFRPNSTQL------ATSSFDK 572
Query: 289 AITLWD 272
I +WD
Sbjct: 573 TIKIWD 578
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -3
Query: 469 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 290
DGK+ S G D + I++ +++ EH I DV + L A D
Sbjct: 521 DGKLLASAGHDKKVFIWNMETLQVESTPEEHAHIITDVRFRPNSTQL------ATSSFDK 574
Query: 289 AITLWD 272
I +WD
Sbjct: 575 TIKIWD 580
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -3
Query: 469 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 290
DGK+ S G D + I++ +++ EH I DV + L A D
Sbjct: 521 DGKLLASAGHDKKVFIWNMETLQVESTPEEHAHIITDVRFRPNSTQL------ATSSFDK 574
Query: 289 AITLWD 272
I +WD
Sbjct: 575 TIKIWD 580
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -3
Query: 469 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 290
DGK+ S G D + I++ +++ EH I DV + L A D
Sbjct: 521 DGKLLASAGHDKKVFIWNMETLQVESTPEEHAHIITDVRFRPNSTQL------ATSSFDK 574
Query: 289 AITLWD 272
I +WD
Sbjct: 575 TIKIWD 580
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -3
Query: 469 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 290
DGK+ S G D + I++ +++ EH I DV + L A D
Sbjct: 521 DGKLLASAGHDKKVFIWNMETLQVESTPEEHAHIITDVRFRPNSTQL------ATSSFDK 574
Query: 289 AITLWD 272
I +WD
Sbjct: 575 TIKIWD 580
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 466 GKVFTSGGWDGHIRIFSWFSM 404
G V +GGWDG IR F + +
Sbjct: 630 GMVIVTGGWDGQIRTFQNYGL 650
>At4g24805.1 68417.m03553 expressed protein
Length = 247
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 493 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMR 401
+NK + KV+T+ WD +R+FS F R
Sbjct: 69 LNKTQNPKLRKVWTTRDWDRKVRVFSTFFRR 99
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/75 (24%), Positives = 32/75 (42%)
Frame = -3
Query: 493 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYI 314
I V+ + S D IRI++W S + VLT H + ++ K +
Sbjct: 96 IRTVQFHHENPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP------KEDL 149
Query: 313 MAAGGLDGAITLWDL 269
+ + LD + +WD+
Sbjct: 150 VVSASLDQTVRVWDI 164
>At1g24130.1 68414.m03044 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats
(PF00400);similar to beta transducin-like protein
HET-D2Y (GI:17225210) [Podospora anserina].
Length = 415
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -3
Query: 586 GNASNVIQIFNLGRKDLSLTLKLDVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIF 419
G+A I+++N +KD +L +T +N + DGKV SG D I ++
Sbjct: 252 GSADKKIKVWN--KKDKKHSLVATLTKHLSAVNALAISEDGKVLYSGACDRSILVW 305
>At2g31300.1 68415.m03821 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
identical to putative ARP2/3 protein complex subunit p41
(GI:4432825)[Arabidopsis thaliana]; similar to ARP2/3
complex 41 kDa subunit (P41-ARC) (Actin-related protein
2/3 complex subunit 1B) (SP:Q9WV32) [Mus musculus]
Length = 378
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 325 KAYIMAAGGLDGAITLWDLYNSKQ 254
K + GLDG I +WDL N +Q
Sbjct: 349 KVMRFSTSGLDGKIAIWDLENMQQ 372
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/61 (21%), Positives = 33/61 (54%)
Frame = -3
Query: 451 SGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWD 272
S ++G ++++ + + + EH++ + + YS+ +L +A+G DG++ LW
Sbjct: 551 SSNFEGVVQVWDVARNQLVTEMKEHEKRVWSIDYSSADPTL-----LASGSDDGSVKLWS 605
Query: 271 L 269
+
Sbjct: 606 I 606
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/61 (21%), Positives = 33/61 (54%)
Frame = -3
Query: 451 SGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWD 272
S ++G ++++ + + + EH++ + + YS+ +L +A+G DG++ LW
Sbjct: 551 SSNFEGVVQVWDVARNQLVTEMKEHEKRVWSIDYSSADPTL-----LASGSDDGSVKLWS 605
Query: 271 L 269
+
Sbjct: 606 I 606
>At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 512
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = -3
Query: 460 VFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAIT 281
V+T+ D I I + R + L E+K ++ + + K W+ GG D A+
Sbjct: 265 VYTADDGDSQISILNLNKTREVTFL-ENKPHVKGIINNI-KFMPWENTCFVTGGSDHAVV 322
Query: 280 LWD 272
LW+
Sbjct: 323 LWN 325
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 466 GKVFTSGGWDGHIRIF 419
G V +GGWDG I++F
Sbjct: 674 GLVIVTGGWDGRIKLF 689
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 466 GKVFTSGGWDGHIRIF 419
G V +GGWDG I++F
Sbjct: 670 GLVIVTGGWDGRIKLF 685
>At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400);
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]
Length = 837
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = -3
Query: 469 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSL-WKAYI---MAAG 302
+G++F + G + I+IF S+ + + + ++A ++ SL W +YI +A+
Sbjct: 545 EGELFATAGVNKKIKIFECNSI--VNDNRDIHYPVVELAGRSKLSSLCWNSYIKSQIASS 602
Query: 301 GLDGAITLWDLYNSK 257
DG + +WD+ S+
Sbjct: 603 NFDGVVQIWDVARSQ 617
>At1g52730.2 68414.m05959 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = -3
Query: 466 GKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGA 287
G+ F +GG D +R+F +++ + H + V ++ +S A+G DG
Sbjct: 240 GEKFVAGGEDMWVRVFDFYTGEEIGCNKGHHGPVHCVRFTPTGLS------YASGSEDGT 293
Query: 286 ITLW 275
I +W
Sbjct: 294 IRIW 297
>At1g52730.1 68414.m05958 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = -3
Query: 466 GKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGA 287
G+ F +GG D +R+F +++ + H + V ++ +S A+G DG
Sbjct: 240 GEKFVAGGEDMWVRVFDFYTGEEIGCNKGHHGPVHCVRFTPTGLS------YASGSEDGT 293
Query: 286 ITLW 275
I +W
Sbjct: 294 IRIW 297
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = -3
Query: 472 SDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLD 293
SDG+ S D ++I + + L +LT H++ V + + I+A+G LD
Sbjct: 113 SDGRTLASTHGDHTVKIIDCETGKCLKILTGHRRTPWVVRFHPR-----HSEIVASGSLD 167
Query: 292 GAITLWD 272
+ LW+
Sbjct: 168 HEVRLWN 174
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = -3
Query: 472 SDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLD 293
SDG+ S D ++I + + L +LT H++ V + + I+A+G LD
Sbjct: 113 SDGRTLASTHGDHTVKIIDCETGKCLKILTGHRRTPWVVRFHPR-----HSEIVASGSLD 167
Query: 292 GAITLWD 272
+ LW+
Sbjct: 168 HEVRLWN 174
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,967,624
Number of Sequences: 28952
Number of extensions: 247269
Number of successful extensions: 691
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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