BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P01_pT_H22 (682 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 30 0.27 SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.62 SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 27 2.5 SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 26 5.8 SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 5.8 >SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosaccharomyces pombe|chr 3|||Manual Length = 574 Score = 30.3 bits (65), Expect = 0.27 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +3 Query: 576 LGIPL*LHTLPNTCLFSKQTVSSGQEVSDVLXH 674 LG+P PN C+FS V G +D+L H Sbjct: 411 LGLPSNFKCFPNPCMFSINDVVFGVSTNDILLH 443 >SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 536 Score = 29.1 bits (62), Expect = 0.62 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 2/99 (2%) Frame = +2 Query: 122 SSRVGTPITTLSEVASLSIPSQ*RFPSG*AGEMALTKATF--RGSIGSYFMS*RMYPPHF 295 S+ P ++ S AS S+ S PS + ++ + AT S S S P Sbjct: 17 SASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPAS 76 Query: 296 SSFLISL*NQSTKSASK*RFGPTAW*TSHLVSSSRAAFT 412 SSF+ SL + S++ +S T+ ++ L SSS A+ T Sbjct: 77 SSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPT 115 >SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 2052 Score = 27.1 bits (57), Expect = 2.5 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -2 Query: 663 HPKPLVLKKPSAWKISKYLGECAVREEY 580 H P L +PSA ++ KYL E A + Y Sbjct: 4 HDPPAPLSQPSASRLQKYLLESAEKHAY 31 >SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosaccharomyces pombe|chr 2|||Manual Length = 399 Score = 25.8 bits (54), Expect = 5.8 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = -3 Query: 215 HQLIHSEIFTGKELKGKLLQIMW*SACPPLRIWASP*RTWKTRFRG 78 HQL SEI TG+E + + + L + A +TWK R +G Sbjct: 261 HQLSDSEIITGEEEEESIFSVR-----ARLYVVADEKKTWKERGQG 301 >SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1610 Score = 25.8 bits (54), Expect = 5.8 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = -2 Query: 477 LYKNGLATVKQPVFVSDVAQGI 412 L K GL++ K P+FVS + +G+ Sbjct: 1016 LGKLGLSSSKSPIFVSSILEGL 1037 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,069,487 Number of Sequences: 5004 Number of extensions: 67029 Number of successful extensions: 187 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 185 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 187 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 313902888 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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