Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H22
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20360.1 68415.m02377 expressed protein                             59   3e-09
At3g23660.1 68416.m02975 transport protein, putative similar to ...    29   2.2  
At1g32220.1 68414.m03963 expressed protein                             29   2.2  
At4g29050.1 68417.m04155 lectin protein kinase family protein co...    29   2.8  
At1g30000.1 68414.m03669 glycoside hydrolase family 47 protein s...    29   3.8  
At3g52690.1 68416.m05804 hypothetical protein predicted proteins...    28   5.0  
At2g42650.1 68415.m05278 60S ribosomal protein-related similar t...    28   5.0  
At5g11040.1 68418.m01290 expressed protein weak similarity to hy...    27   8.7  
At3g56330.1 68416.m06262 N2,N2-dimethylguanosine tRNA methyltran...    27   8.7  

>At2g20360.1 68415.m02377 expressed protein
          Length = 402

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
 Frame = -2

Query: 645 LKKPSAWKISKYLGECAVREEYPTATIIRASDIYGSEDRFLRSLVNKMRSHSNLMPLYKN 466
           +  PS    +K   E AV    P ATI+R + + G+EDR L      ++ +   +PL   
Sbjct: 190 VSSPSRMLRAKAAAEEAVLNALPEATIMRPATMIGTEDRILNPWSMFVKKY-GFLPLIGG 248

Query: 465 GLATVKQPVFVSDVAQGIVNAARDDDTKC-EVYQAVGPKRYLLADLVDWFYKLMRKDEKW 289
           G  T  QPV+V DVA  IV A +DD +   + Y+  GP  +   +L +  Y ++R   +W
Sbjct: 249 G-TTKFQPVYVVDVAAAIVAALKDDGSSMGKTYELGGPDVFTTHELAEIMYDMIR---EW 304

Query: 288 GGYIR 274
             Y++
Sbjct: 305 PRYVK 309


>At3g23660.1 68416.m02975 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 765

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = -2

Query: 594 VREEYPTATIIRASDIYGSEDRFLRSLVNKMRSHSNLMPLYKNGLATVKQPVFVSDVA 421
           VRE +P   ++   D +GS+ RFL + +N   +++N      N ++T    +F  DV+
Sbjct: 699 VRERFPVPRLV-VCDQHGSQARFLLAKLNPSATYNN-----ANEMSTGSDVIFTDDVS 750


>At1g32220.1 68414.m03963 expressed protein
          Length = 296

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -2

Query: 549 IYGSEDRFLRSLVNKMRSHSNLMPLYKNGLATVKQPVFVSDVAQGIVNAARDDD 388
           IY S +RF+R L +   S   L P           PV V D+A  ++NA +DDD
Sbjct: 235 IYDSAERFIRPLRSLPASDLILAP-----------PVNVDDLALAVINAVKDDD 277


>At4g29050.1 68417.m04155 lectin protein kinase family protein
           contains Pfam domains, PF00138: Legume lectins alpha
           domain, PF00139: Legume lectins beta domain and PF00069:
           Protein kinase domain
          Length = 669

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 124 GFGRHLDAHGRPGSVGTETFSRPSVLHG 41
           GFG   ++   P SV T TF+ P V HG
Sbjct: 641 GFGEAAESLAEPCSVATLTFTEPFVSHG 668


>At1g30000.1 68414.m03669 glycoside hydrolase family 47 protein
           similar to GI:5579331 from [Homo sapiens]; contains Pfam
           profile PF01532: Glycosyl hydrolase family 47
          Length = 624

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 300 DEKWGGYIRYDMKYDPILPL 241
           D  W GY +Y M YD ++P+
Sbjct: 137 DHAWSGYRKYAMGYDELMPI 156


>At3g52690.1 68416.m05804 hypothetical protein predicted proteins,
           Arabidopsis thaliana
          Length = 299

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = -3

Query: 218 FHQLIHSEIFTGKELKGKLLQIMW*SACPPLRI 120
           F+QL+H EI+T KE    LL++M  S+ P L++
Sbjct: 161 FYQLVHLEIYTCKEEWWNLLKLMLDSS-PKLQV 192


>At2g42650.1 68415.m05278 60S ribosomal protein-related similar to
           PBK1 protein (GI:3668141) [Homo sapiens]; weak
           similarity to 60S ribosomal protein L10a.
           (Swiss-Prot:Q9SW75) [Chlamydomonas reinhardtii]
          Length = 372

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = -2

Query: 633 SAWKISKYLGECAVREEYPTATIIRASDIYGSEDRFLRSLVNKMRSHSNLMPLYKN--GL 460
           SA K++K   E     E  TAT+    D+  S  +++RSL  K+ S S  +PLY+    L
Sbjct: 187 SAIKVAKLSMESDDIVENVTATLNGVVDVLPSRWKYIRSLHLKL-SESLSLPLYQTVPYL 245

Query: 459 ATVKQPVFVSDVAQGIVNAARDDD 388
                P+ V +V  G   A  D D
Sbjct: 246 QLKIDPLGVEEVKNGEGLAKSDVD 269


>At5g11040.1 68418.m01290 expressed protein weak similarity to
            hypercellular protein [Aspergillus nidulans] GI:9309269
          Length = 1186

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -2

Query: 243  LKVALVNAISPAYPLGNLHWEGIEREATSDNVVIGVPTLEDLGVTLTHMEDQVPWEL 73
            +K  L++   PA+   NL  E IERE+ +D++V   P     G+    +E   P ++
Sbjct: 847  VKARLLSMEIPAHVSDNLRDEDIERESNADSLVKINPFRGSWGLRFLELELSNPTDV 903


>At3g56330.1 68416.m06262 N2,N2-dimethylguanosine tRNA
           methyltransferase family protein low similarity to
           SP|Q9P804 N(2),N(2)-dimethylguanosine tRNA
           methyltransferase (EC 2.1.1.32)
           (tRNA(guanine-26,N(2)-N(2)) methyltransferase)
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF02005: N2,N2-dimethylguanosine tRNA methyltransferase
          Length = 433

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -2

Query: 627 WKISKYLGECAVREEYPTATIIRASDI--YGSEDRFLRSLVNKMR 499
           W ++  L   A+ E Y  A      DI  +GS+  FLR   N +R
Sbjct: 145 WVVTHMLANKAMIERYMVADFFDMIDIDSFGSDSSFLRDAFNALR 189


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,304,209
Number of Sequences: 28952
Number of extensions: 360611
Number of successful extensions: 882
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)