Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H21
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0940 - 29539138-29539626,29540125-29540531,29540631-295406...    28   6.8  
03_01_0321 + 2512830-2513114,2513390-2513428,2513647-2513674,251...    27   8.9  

>04_04_0940 -
           29539138-29539626,29540125-29540531,29540631-29540662,
           29540809-29541086,29541164-29542515,29542616-29542874
          Length = 938

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = +2

Query: 299 VFDLV*SYFDLKKPTFI*RDNDYARFLSYLVLSSFNRRKLVFFYK*KKKHXTSYNSPIAD 478
           V DLV  Y+  K+ T I  DNDY R     +    ++R+    YK   +   S N+ IAD
Sbjct: 153 VADLV-EYYGWKQVTTIFVDNDYGRNAISSLGDELSKRRSKILYKAPFRPGAS-NNEIAD 210

Query: 479 V 481
           V
Sbjct: 211 V 211


>03_01_0321 +
           2512830-2513114,2513390-2513428,2513647-2513674,
           2513893-2513975,2514104-2514144,2514539-2514624,
           2514941-2514963
          Length = 194

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 242 CDRATLVNCFFFFYNILIRVFDL 310
           CD  +L + F F YN+  ++FDL
Sbjct: 152 CDPLSLYSSFHFLYNLTSKMFDL 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,265,239
Number of Sequences: 37544
Number of extensions: 125718
Number of successful extensions: 150
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)