Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H21
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83218-6|CAI58632.1|  273|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z81496-11|CAB04069.2|  448|Caenorhabditis elegans Hypothetical p...    28   6.1  
AY204204-1|AAO39205.1|  448|Caenorhabditis elegans nuclear recep...    28   6.1  

>Z83218-6|CAI58632.1|  273|Caenorhabditis elegans Hypothetical
           protein C31A11.10 protein.
          Length = 273

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 182 LQYNIFRFLNTLEYFKLFFFCDRATLVNCFFFFYNILIRVFD 307
           L  +I R + TL  F +F++  R  L+NCF +F+ I I   D
Sbjct: 99  LSISIERAVATL--FPIFYYNYRQNLLNCFVWFFIICIVSID 138


>Z81496-11|CAB04069.2|  448|Caenorhabditis elegans Hypothetical
           protein F09C6.9 protein.
          Length = 448

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
 Frame = +2

Query: 164 GSPRQN---LQYNIFRFLNTLEYFKLFFFCDRATLVNCFFFFYNILIRVFDLV*SYFDLK 334
           G P+ N    Q+  F    T+EY K F F  R    + F    +I +   +L  SY  + 
Sbjct: 250 GGPKHNPDRKQWMYFNLFTTVEYAKTFMFFHRLDSRDKFILTKHITLSCMNLHLSYISVA 309

Query: 335 KPTFI*RDNDYARFLS 382
           + + +  + D   F S
Sbjct: 310 RKSEVLTNPDGTSFPS 325


>AY204204-1|AAO39205.1|  448|Caenorhabditis elegans nuclear receptor
           NHR-116 protein.
          Length = 448

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
 Frame = +2

Query: 164 GSPRQN---LQYNIFRFLNTLEYFKLFFFCDRATLVNCFFFFYNILIRVFDLV*SYFDLK 334
           G P+ N    Q+  F    T+EY K F F  R    + F    +I +   +L  SY  + 
Sbjct: 250 GGPKHNPDRKQWMYFNLFTTVEYAKTFMFFHRLDSRDKFILTKHITLSCMNLHLSYISVA 309

Query: 335 KPTFI*RDNDYARFLS 382
           + + +  + D   F S
Sbjct: 310 RKSEVLTNPDGTSFPS 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,104,577
Number of Sequences: 27780
Number of extensions: 146710
Number of successful extensions: 301
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)