Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H21
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.6  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 168 DPKKKINVALNLIQHVLIEIKKKC 97
           D K K+N AL  +QH L  +   C
Sbjct: 307 DKKSKVNFALPELQHNLNILVDMC 330


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 55  ITLKHVEXKAEMIRALLY 2
           + L+HV+ +AE   A+LY
Sbjct: 347 LVLRHVQAEAEKHAAMLY 364


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 584 TPCTRAAPRG 613
           TPCT + PRG
Sbjct: 392 TPCTPSPPRG 401


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,500
Number of Sequences: 438
Number of extensions: 1866
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)