Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H20
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6677| Best HMM Match : Ribosomal_L1 (HMM E-Value=0.4)               46   2e-05
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.43 
SB_41172| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-21)                 31   0.75 
SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)               31   0.99 
SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.99 
SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.3  
SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07)                 28   7.0  
SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_6677| Best HMM Match : Ribosomal_L1 (HMM E-Value=0.4)
          Length = 81

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 20/23 (86%), Positives = 22/23 (95%)
 Frame = -2

Query: 321 SESLIKQIPRLLGPGLNKAGKXP 253
           S+SLIKQIPR+LGPGLNKAGK P
Sbjct: 28  SDSLIKQIPRILGPGLNKAGKFP 50


>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1291

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 11/44 (25%), Positives = 27/44 (61%)
 Frame = -1

Query: 160 SVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKST 29
           ++ VGH      E+  N+  +++ L  ++ + W N++SL++K++
Sbjct: 322 AMKVGHTGQEKKEVISNIVEAVSGLAKIIPRGWNNIQSLNIKTS 365


>SB_41172| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-21)
          Length = 342

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 18/114 (15%)
 Frame = +1

Query: 385 FQSLSIHTWHIQGFSLVTMLLVSKNA----NLHFRPRYVF*LYSAGETLVLLWVIVLQTN 552
           + S  + TW +   S +T+  +S        LH R + +F +  A   L+++W+I L  N
Sbjct: 100 YMSFELSTWLLLMSSFLTLTAISCERFAALTLHLRYQQMFTMKRAAMALIMIWLISLSLN 159

Query: 553 -LKLYSLQKVTF----------LVLRGLKNGIHALVERVTRH---FRRHFVCQR 672
            ++L  L+ + +          LVL  L N  + L++ V RH    R H V QR
Sbjct: 160 VIRLLLLESLFWCITLTTVSICLVLILLTN--YVLIKAVQRHRKLIRSHQVVQR 211


>SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
          Length = 1243

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
 Frame = -2

Query: 720 FGRPMLLQLPSVVIGGSLTNKMSSKVSRDTL-YECVNAV-LQSSKDKKRNFLETVEL--- 556
           FG+ + +  P V+   ++ +    + S D L Y C N   + + K  K  F+  + L   
Sbjct: 272 FGKLIAVDKPCVMKYHTVPHAFCGRESYDPLRYRCCNHQHIYNPKTSKCCFIHVIPLDAA 331

Query: 555 -----QIGLKNYDPQKDKRFSGTVKLKYIPRPKM-QVC---VLGDQQHC 436
                Q G K YDP K+K      K KY+  PK+ + C   ++  +QHC
Sbjct: 332 CIKLLQCGKKFYDPLKEK----CAKNKYVYNPKIYKYCYGRIIPVKQHC 376


>SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1402

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
 Frame = -2

Query: 720 FGRPMLLQLPSVVIGGSLTNKMSSKVSRDTL-YECVNAV-LQSSKDKKRNFLETVEL--- 556
           FG+ + +  P V+   ++ +    + S D L Y C N   + + K  K  F+  + L   
Sbjct: 272 FGKLIAVDKPCVMKYHTVPHAFCGRESYDPLRYRCCNHQHIYNPKTSKCCFIHVIPLDAA 331

Query: 555 -----QIGLKNYDPQKDKRFSGTVKLKYIPRPKM-QVC---VLGDQQHC 436
                Q G K YDP K+K      K KY+  PK+ + C   ++  +QHC
Sbjct: 332 CIKLLQCGKKFYDPLKEK----CAKNKYVYNPKIYKYCYGRIIPVKQHC 376


>SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 76  AVTQGS*WKDAHSEQAHQESCPH 144
           AV+    WK  H+ Q  QESCPH
Sbjct: 103 AVSNPCFWKWIHAHQTAQESCPH 125


>SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1161

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +1

Query: 409 WHIQGFSLVTMLLVSKNANLHFRPRYVF*LYSAGETLVLLWVIVLQTNLKLYSLQKVTFL 588
           W I    LV  L+ + N +   R ++VF +    E L+ +W +  +T L    +Q   F+
Sbjct: 296 WFIWTAVLVDALIQANNGSWRRRAQFVFTILFDIEALIKIWCVGFRTYLNSSRMQFFEFI 355

Query: 589 V 591
           +
Sbjct: 356 L 356


>SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 163 LSVAVGHVDMTPDELAQNVHLSINFLVSLLKKH 65
           +S AV  +  TPD ++  V   +N L SL KKH
Sbjct: 654 VSSAVSEMSDTPDNVSNQVEKVVNELKSLKKKH 686


>SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07)
          Length = 1286

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 99  PSTSLCHCSRNTGRMSD 49
           PS   CHC  N GRM D
Sbjct: 526 PSDPTCHCPSNNGRMKD 542


>SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 604 KNGIHALVERVTRHFRRHFVCQRTTYH 684
           K G+H ++ +VT + RRH++ + T  H
Sbjct: 284 KKGVHMILGQVTGNARRHYIPKFTANH 310


>SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1867

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +1

Query: 409 WHIQGFSLVTMLLVSKNANLHFRPRYVF*LYSAGETLVLLWVIVLQTNLKLYSLQKVTFL 588
           W I    LV  L+ + N +   + ++VF +    E L+ +W +  +T L    +Q   F+
Sbjct: 395 WFIWFAVLVDALIQANNGSWRRQAQFVFTILFDIEALIKIWCVGFRTYLNSSRMQFFEFI 454

Query: 589 VLRG 600
           +  G
Sbjct: 455 LAVG 458


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,258,498
Number of Sequences: 59808
Number of extensions: 486987
Number of successful extensions: 1108
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)