Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_H20
(748 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB) 145 3e-35
At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB) 145 3e-35
At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA) si... 143 1e-34
At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC) 139 2e-33
At2g42650.1 68415.m05278 60S ribosomal protein-related similar t... 48 9e-06
At3g58660.1 68416.m06538 60S ribosomal protein-related contains ... 44 8e-05
At1g06380.1 68414.m00674 ribosomal protein-related similar to PB... 35 0.066
At5g41880.1 68418.m05099 DNA primase small subunit family contai... 33 0.15
At5g10610.1 68418.m01228 cytochrome P450 family protein similar ... 31 0.81
At1g08400.1 68414.m00929 chromosome structural maintenance prote... 30 1.4
At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta... 30 1.9
At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related conta... 29 2.5
At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related conta... 29 2.5
At2g42710.1 68415.m05289 ribosomal protein L1 family protein 29 3.3
At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitam... 29 4.3
At3g29100.1 68416.m03643 vesicle transport v-SNARE 13 (VTI13) / ... 29 4.3
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 29 4.3
At4g21150.1 68417.m03057 ribophorin II (RPN2) family protein con... 28 5.7
At4g18340.1 68417.m02721 glycosyl hydrolase family 17 protein si... 27 10.0
>At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 145 bits (351), Expect = 3e-35
Identities = 71/133 (53%), Positives = 89/133 (66%)
Frame = -2
Query: 651 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 472
SK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 471 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPR 292
M++C+LGD QH +EA+ + + M ASES+IKQIPR
Sbjct: 62 MKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPR 121
Query: 291 LLGPGLNKAGKXP 253
LLGPGLNKAGK P
Sbjct: 122 LLGPGLNKAGKFP 134
Score = 101 bits (241), Expect = 7e-22
Identities = 44/69 (63%), Positives = 58/69 (84%)
Frame = -1
Query: 217 RLMKXKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHM 38
++ + K T+KFQ+KKVLC+ VAVG++ M +L QNV +S+NFLVSLLKK+WQNVR L++
Sbjct: 146 KVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYL 205
Query: 37 KSTMGPPQR 11
KSTMGPPQR
Sbjct: 206 KSTMGPPQR 214
>At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 145 bits (351), Expect = 3e-35
Identities = 71/133 (53%), Positives = 89/133 (66%)
Frame = -2
Query: 651 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 472
SK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 471 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPR 292
M++C+LGD QH +EA+ + + M ASES+IKQIPR
Sbjct: 62 MKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPR 121
Query: 291 LLGPGLNKAGKXP 253
LLGPGLNKAGK P
Sbjct: 122 LLGPGLNKAGKFP 134
Score = 101 bits (241), Expect = 7e-22
Identities = 44/69 (63%), Positives = 58/69 (84%)
Frame = -1
Query: 217 RLMKXKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHM 38
++ + K T+KFQ+KKVLC+ VAVG++ M +L QNV +S+NFLVSLLKK+WQNVR L++
Sbjct: 146 KVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYL 205
Query: 37 KSTMGPPQR 11
KSTMGPPQR
Sbjct: 206 KSTMGPPQR 214
>At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA)
similar to 60S ribosomal protein L10A GB:AAC73045
GI:3860277 from [Arabidopsis thaliana]
Length = 216
Score = 143 bits (347), Expect = 1e-34
Identities = 70/133 (52%), Positives = 88/133 (66%)
Frame = -2
Query: 651 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 472
SK+ + + E + + S+ KKRNF+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 471 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPR 292
M++C+LGD QH +EA+ + + M ASES+IKQIPR
Sbjct: 62 MKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPR 121
Query: 291 LLGPGLNKAGKXP 253
LLGPGLNKAGK P
Sbjct: 122 LLGPGLNKAGKFP 134
Score = 100 bits (239), Expect = 1e-21
Identities = 43/69 (62%), Positives = 58/69 (84%)
Frame = -1
Query: 217 RLMKXKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHM 38
++ + K T+KFQ+KKVLC+ VAVG++ M ++ QNV +S+NFLVSLLKK+WQNVR L++
Sbjct: 146 KVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYL 205
Query: 37 KSTMGPPQR 11
KSTMGPPQR
Sbjct: 206 KSTMGPPQR 214
>At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC)
Length = 217
Score = 139 bits (337), Expect = 2e-33
Identities = 68/134 (50%), Positives = 89/134 (66%), Gaps = 1/134 (0%)
Frame = -2
Query: 651 SKVSRDTLYECVNAVLQSSKDKK-RNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 475
SK+ + + E +++++ K+ K RNF ET+ELQIGLKNYDPQKDKRFSG+VKL ++PRP
Sbjct: 2 SKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRP 61
Query: 474 KMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIP 295
KM++C+LGD QH +EA+ + + M ASES+IKQIP
Sbjct: 62 KMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQIP 121
Query: 294 RLLGPGLNKAGKXP 253
RLLGPGLNKAGK P
Sbjct: 122 RLLGPGLNKAGKFP 135
Score = 98.3 bits (234), Expect = 5e-21
Identities = 42/69 (60%), Positives = 57/69 (82%)
Frame = -1
Query: 217 RLMKXKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHM 38
++ + K T+KFQ+KKVLC+ VAVG++ M ++ QNV +S+NFLVSLLKK+WQNVR L++
Sbjct: 147 KVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYL 206
Query: 37 KSTMGPPQR 11
KSTMGPP R
Sbjct: 207 KSTMGPPNR 215
>At2g42650.1 68415.m05278 60S ribosomal protein-related similar to
PBK1 protein (GI:3668141) [Homo sapiens]; weak
similarity to 60S ribosomal protein L10a.
(Swiss-Prot:Q9SW75) [Chlamydomonas reinhardtii]
Length = 372
Score = 47.6 bits (108), Expect = 9e-06
Identities = 23/85 (27%), Positives = 43/85 (50%)
Frame = -1
Query: 289 VGSRFEQSW*IXLVFSPTRSP*RRRLMKXKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 110
+G +F QS + + ++ K G F M+ C ++ V + M D++ +N
Sbjct: 145 IGKKFFQSKKTPVAIDLKHMNWKEQIEKACGAAMFFMRTGSCSAIKVAKLSMESDDIVEN 204
Query: 109 VHLSINFLVSLLKKHWQNVRSLHMK 35
V ++N +V +L W+ +RSLH+K
Sbjct: 205 VTATLNGVVDVLPSRWKYIRSLHLK 229
>At3g58660.1 68416.m06538 60S ribosomal protein-related contains
weak similarity to 60S ribosomal protein L10A (CSA-19)
(NEDD-6) (Swiss-Prot:P53026) [Mus musculus]
Length = 446
Score = 44.4 bits (100), Expect = 8e-05
Identities = 25/85 (29%), Positives = 41/85 (48%)
Frame = -1
Query: 289 VGSRFEQSW*IXLVFSPTRSP*RRRLMKXKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 110
+G +F S I + + ++ K G+ F ++ C + VG + M E+ +N
Sbjct: 165 IGKKFFTSKKIPVALDLKHRNWKHQIEKACGSAMFFIRTGTCSVIKVGKLSMDICEITEN 224
Query: 109 VHLSINFLVSLLKKHWQNVRSLHMK 35
V ++N LV L W VRSLH+K
Sbjct: 225 VMATLNGLVEFLPNKWTYVRSLHLK 249
>At1g06380.1 68414.m00674 ribosomal protein-related similar to PBK1
protein (GI:3668141) {Homo sapiens}; weakly similar to
60S ribosomal protein L10a. (SP:Q963B6) [Fall armyworm]
{Spodoptera frugiperda}
Length = 254
Score = 34.7 bits (76), Expect = 0.066
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -1
Query: 166 CLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 35
C V V + M +E+A+NV ++N + L+ W+NV+ H+K
Sbjct: 197 CSVVKVAKLSMGRNEIAENVVAAMNGIGDLVPGRWKNVKLFHLK 240
>At5g41880.1 68418.m05099 DNA primase small subunit family contains
Pfam profile: PF01896 DNA primase small subunit
Length = 407
Score = 33.5 bits (73), Expect = 0.15
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = -2
Query: 672 SLTNKMSSKVSRDTLYECVNAVLQSSKDKK---RNFLETVELQIGLKNYDPQKDKRFSGT 502
S + +S + + +E + LQS ++K R +E + D + K+ +
Sbjct: 275 SARSSLSEEATSLLRWEQLKKALQSKRNKALSLRTCVEEIVFTFTYPRIDLEVSKQMNHL 334
Query: 501 VKLKYIPRPKM-QVCVLGDQQHCDEAKTLNVPCM 403
+K + PK +VCV D +CDE L VP +
Sbjct: 335 LKAPFCVHPKTGRVCVPIDPNNCDEFDPLAVPTL 368
>At5g10610.1 68418.m01228 cytochrome P450 family protein similar to
Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis
thaliana]; similar to cytochrome P450, Helianthus
tuberosus, EMBL:HTCYP81L
Length = 500
Score = 31.1 bits (67), Expect = 0.81
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 573 LETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVC 460
L V + G+K DP+ +KRF KL++ M VC
Sbjct: 185 LRLVSGKRGVKKSDPESEKRFLDDFKLRFFSSMSMNVC 222
>At1g08400.1 68414.m00929 chromosome structural maintenance
protein-related contains weak similarity to
RAD50-interacting protein 1 [Homo sapiens]
gi|11967435|gb|AAG42101
Length = 804
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -2
Query: 654 SSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 514
+SKV + N +L DKK ++ ++ L GL+ ++ QK+KR
Sbjct: 232 TSKVEHGEVDSIPNPLLLMQGDKKESYSQSFLLLCGLQQHNTQKEKR 278
>At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 738
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -1
Query: 121 LAQNVHLSINFLVSLLKKH 65
+ + VHLS+NF++ L+KKH
Sbjct: 322 IVEGVHLSLNFVMGLMKKH 340
>At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 698
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -1
Query: 121 LAQNVHLSINFLVSLLKKH 65
+ + VHLS+NF++ L+KKH
Sbjct: 279 VVEGVHLSLNFVMGLMKKH 297
>At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 717
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -1
Query: 121 LAQNVHLSINFLVSLLKKH 65
+ + VHLS+NF++ L+KKH
Sbjct: 298 VVEGVHLSLNFVMGLMKKH 316
>At2g42710.1 68415.m05289 ribosomal protein L1 family protein
Length = 415
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -1
Query: 199 GTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLV-----SLLK--KHWQNVRSLH 41
G KF+M K L V +G + + + L +NV +N L+ L K K+ V + H
Sbjct: 327 GHTKFRMDKTSILHVPLGKMSFSEEALRENVGAFMNALLLAKPAGLKKTSKYAGYVNAFH 386
Query: 40 MKSTMG 23
+ STMG
Sbjct: 387 LCSTMG 392
>At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitamin
E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)
identical to SP|Q94FY7 Tocopherol cyclase, chloroplast
precursor (Vitamin E deficient 1) (Sucrose export
defective 1) {Arabidopsis thaliana}
Length = 488
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 473 FGRGMYFSFTVPEKRLSFC 529
F G YF ++PEKR SFC
Sbjct: 91 FFEGWYFRVSIPEKRESFC 109
>At3g29100.1 68416.m03643 vesicle transport v-SNARE 13 (VTI13) /
vesicle soluble NSF attachment protein receptor 13
identical to identical to Vesicle transport v-SNARE 13
(SP:Q9LVP9) {Arabidopsis thaliana}; similar to v-snare
AtVTI1a (GI:6690274) (GB:AAF24061) [Arabidopsis
thaliana]
Length = 195
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -2
Query: 747 RLTIGNLNEFGRPMLLQLPSV-VIGGSLTNKMSSKVSRDTLYECVNAVLQSSKDKKRNFL 571
R+T GNLN R LL+ + S + +S D L + + KD +R L
Sbjct: 64 RITSGNLNATARDELLEAGMADTLTASADQRSRLMMSTDHLGRTTDRI----KDSRRTIL 119
Query: 570 ETVELQIGL 544
ET EL + +
Sbjct: 120 ETEELGVSI 128
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; contains TIGRFAM TIGR00864:
polycystin cation channel protein; similar to
fimbriae-associated protein Fap1 [Streptococcus
parasanguinis] (GI:3929312)
Length = 1498
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = +3
Query: 495 ALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEERHSRTRRACHETL*TTFCLSE 671
A+ + HS + EALQS S V +++ SR R H TT L+E
Sbjct: 871 AVMAEERSARKAMHSKRQEIEALQSMISRVKSAASVDDIDSRVRNMEHTMQHTTLSLNE 929
>At4g21150.1 68417.m03057 ribophorin II (RPN2) family protein
contains Pfam domain PF05817: Ribophorin II (RPN2)
Length = 691
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -2
Query: 726 NEFGRPMLLQLPSVVIGGSLTNKMSSKVSRDTL 628
N+F P++L LPS VI SLT K KV T+
Sbjct: 306 NKFSVPLILSLPSTVI--SLTKKEPLKVKVSTV 336
>At4g18340.1 68417.m02721 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 397
Score = 27.5 bits (58), Expect = 10.0
Identities = 14/79 (17%), Positives = 39/79 (49%)
Frame = -2
Query: 654 SSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 475
S ++++ +Y+ +L + + + T+E Q+ DPQ+ ++ + Y+P
Sbjct: 57 SLRITKTRIYDTNPQILSAFANSNIEIIVTIENQVLPLLQDPQQATQWVDSHIKPYVPAT 116
Query: 474 KMQVCVLGDQQHCDEAKTL 418
++ ++G++ D+ +L
Sbjct: 117 RITGIMVGNELFTDDDSSL 135
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,777,301
Number of Sequences: 28952
Number of extensions: 340916
Number of successful extensions: 832
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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