Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_H19
(457 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62263 Cluster: 40S ribosomal protein S14; n=231; cellu... 188 7e-47
UniRef50_Q4Q6S9 Cluster: 40S ribosomal protein S14; n=1; Leishma... 151 9e-36
UniRef50_Q01E13 Cluster: 40S ribosomal protein S14; n=1; Ostreoc... 120 1e-26
UniRef50_Q58NR0 Cluster: Ribosomal protein S14; n=6; Eukaryota|R... 115 6e-25
UniRef50_P54021 Cluster: 30S ribosomal protein S11P; n=15; Archa... 95 5e-19
UniRef50_Q3LWB9 Cluster: Ribosomal protein S14; n=1; Bigelowiell... 94 1e-18
UniRef50_A0SNY7 Cluster: 30S ribosomal protein S11; n=1; uncultu... 93 3e-18
UniRef50_A0RWI9 Cluster: 30S ribosomal protein S11P; n=2; Thermo... 93 3e-18
UniRef50_A7QYG3 Cluster: Chromosome chr17 scaffold_246, whole ge... 87 2e-16
UniRef50_A4D1M5 Cluster: Similar to ribosomal protein S14; n=3; ... 79 3e-14
UniRef50_A5BMD1 Cluster: Putative uncharacterized protein; n=1; ... 74 2e-12
UniRef50_UPI0000DBF82A Cluster: UPI0000DBF82A related cluster; n... 58 7e-08
UniRef50_A3A282 Cluster: Putative uncharacterized protein; n=3; ... 58 1e-07
UniRef50_Q5LW33 Cluster: 30S ribosomal protein S11; n=15; Bacter... 54 2e-06
UniRef50_P59378 Cluster: 30S ribosomal protein S11; n=48; Bacter... 51 1e-05
UniRef50_A6YE90 Cluster: Ribosomal protein S11; n=5; cellular or... 50 2e-05
UniRef50_A6PT07 Cluster: Ribosomal protein S11; n=1; Victivallis... 48 7e-05
UniRef50_P59375 Cluster: 30S ribosomal protein S11; n=85; cellul... 48 1e-04
UniRef50_Q12G79 Cluster: 30S ribosomal protein S11; n=186; cellu... 48 1e-04
UniRef50_Q1IS96 Cluster: 30S ribosomal protein S11; n=274; cellu... 48 1e-04
UniRef50_P04969 Cluster: 30S ribosomal protein S11; n=155; cellu... 46 5e-04
UniRef50_A0NHE9 Cluster: Ribosomal protein S11; n=1; Oenococcus ... 45 7e-04
UniRef50_Q98Q07 Cluster: 30S ribosomal protein S11; n=33; Bacter... 44 0.001
UniRef50_Q0P3I7 Cluster: Rps11; n=1; Ostreococcus tauri|Rep: Rps... 43 0.004
UniRef50_Q6ASY6 Cluster: Small subunit ribosomal protein, putati... 42 0.005
UniRef50_Q4S8D4 Cluster: Chromosome undetermined SCAF14706, whol... 42 0.008
UniRef50_P56802 Cluster: Chloroplast 30S ribosomal protein S11; ... 40 0.019
UniRef50_Q2GEB7 Cluster: 30S ribosomal protein S11; n=1; Neorick... 40 0.025
UniRef50_Q7YDI4 Cluster: Small subunit ribosomal protein; n=29; ... 40 0.034
UniRef50_P46746 Cluster: Mitochondrial ribosomal protein S11; n=... 39 0.044
UniRef50_Q9PQN5 Cluster: 30S ribosomal protein S11; n=1; Ureapla... 38 0.077
UniRef50_UPI0000586F02 Cluster: PREDICTED: hypothetical protein ... 36 0.31
UniRef50_Q9C6S3 Cluster: 30S ribosomal protein S11, putative; n=... 36 0.41
UniRef50_Q9TLV1 Cluster: Chloroplast 30S ribosomal protein S11; ... 36 0.41
UniRef50_O59305 Cluster: Putative uncharacterized protein PH1639... 36 0.55
UniRef50_P30059 Cluster: Plastid 30S ribosomal protein S11; n=4;... 36 0.55
UniRef50_Q7R4R8 Cluster: GLP_440_63181_70326; n=1; Giardia lambl... 34 1.7
UniRef50_Q8W9P7 Cluster: Ribosomal protein S11; n=1; Mesostigma ... 33 2.9
UniRef50_Q49081 Cluster: 30S ribosomal protein; n=1; Mycoplasma ... 32 5.1
UniRef50_Q0CSH9 Cluster: Predicted protein; n=1; Aspergillus ter... 32 6.7
UniRef50_P25370 Cluster: Good for full DBP5 activity protein 2; ... 32 6.7
UniRef50_UPI0001552E13 Cluster: PREDICTED: hypothetical protein;... 31 8.9
UniRef50_Q8Z9U9 Cluster: DNA replication and repair protein recF... 31 8.9
>UniRef50_P62263 Cluster: 40S ribosomal protein S14; n=231; cellular
organisms|Rep: 40S ribosomal protein S14 - Homo sapiens
(Human)
Length = 151
Score = 188 bits (457), Expect = 7e-47
Identities = 89/108 (82%), Positives = 96/108 (88%)
Frame = -3
Query: 395 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 216
MAPRK K KEE ++LGPQ GE VFGV HIFASFNDTFVHVTDLSG+ETI RVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 215 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTP 72
KVKADRDE+SPYAAMLAAQDVA++CK LGITALHIKLRATGGN+TKTP
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTP 108
Score = 50.0 bits (114), Expect = 2e-05
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = -1
Query: 85 KQRXPGPGAQSALRAIARSSMKIGRIED 2
+ + PGPGAQSALRA+ARS MKIGRIED
Sbjct: 104 RTKTPGPGAQSALRALARSGMKIGRIED 131
>UniRef50_Q4Q6S9 Cluster: 40S ribosomal protein S14; n=1; Leishmania
major|Rep: 40S ribosomal protein S14 - Leishmania major
Length = 203
Score = 151 bits (365), Expect = 9e-36
Identities = 73/120 (60%), Positives = 87/120 (72%)
Frame = -3
Query: 368 KEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEA 189
K+EV+ GP G+ V+GV HIFASFNDTFVHVTD+SGRET +VTGGMKVKADRDE+
Sbjct: 13 KQEVKA-YGPNVKKGDLVYGVVHIFASFNDTFVHVTDMSGRETYVKVTGGMKVKADRDES 71
Query: 188 SPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPWSWCSVCTSGXCSFKYEDWPH 9
SPYAAM+AAQDV +CK GI ALH+K+RA GG +TK+P + EDWPH
Sbjct: 72 SPYAAMMAAQDVVARCKECGINALHVKMRAVGGVRTKSPGPGRPGRPPRARPRRDEDWPH 131
>UniRef50_Q01E13 Cluster: 40S ribosomal protein S14; n=1;
Ostreococcus tauri|Rep: 40S ribosomal protein S14 -
Ostreococcus tauri
Length = 243
Score = 120 bits (290), Expect = 1e-26
Identities = 55/66 (83%), Positives = 62/66 (93%)
Frame = -3
Query: 269 HVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGG 90
HVTDLSG+ET++R TGGMKVKADRDE+SPYAAMLAAQDVA +CK LGITALHIK+RA GG
Sbjct: 90 HVTDLSGKETLSRCTGGMKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKMRAKGG 149
Query: 89 NKTKTP 72
NKTK+P
Sbjct: 150 NKTKSP 155
Score = 48.8 bits (111), Expect = 5e-05
Identities = 25/40 (62%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = -3
Query: 386 RKNKVAKEEVQVT-LGPQHLVGETVFGVAHIFASFNDTFV 270
R V+ V T +GPQ GE VFGVAHIFASFNDTFV
Sbjct: 5 RHRSVSVRRVMATYVGPQAREGELVFGVAHIFASFNDTFV 44
Score = 46.8 bits (106), Expect = 2e-04
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = -1
Query: 85 KQRXPGPGAQSALRAIARSSMKIGRIED 2
K + PGPG QSALRA++RS +KIGRIED
Sbjct: 151 KTKSPGPGGQSALRALSRSGIKIGRIED 178
>UniRef50_Q58NR0 Cluster: Ribosomal protein S14; n=6; Eukaryota|Rep:
Ribosomal protein S14 - Palaemonetes pugio
Length = 77
Score = 115 bits (276), Expect = 6e-25
Identities = 55/70 (78%), Positives = 58/70 (82%)
Frame = -3
Query: 395 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 216
MAPRK K KEEVQV LGPQ GE VF V HI+AS+NDTFVHVTDLSGRETI RVTGG
Sbjct: 1 MAPRKGKTPKEEVQVQLGPQVREGENVFAVCHIYASYNDTFVHVTDLSGRETIIRVTGGQ 60
Query: 215 KVKADRDEAS 186
KVKADRDE+S
Sbjct: 61 KVKADRDESS 70
>UniRef50_P54021 Cluster: 30S ribosomal protein S11P; n=15;
Archaea|Rep: 30S ribosomal protein S11P - Methanococcus
jannaschii
Length = 129
Score = 95.5 bits (227), Expect = 5e-19
Identities = 43/81 (53%), Positives = 58/81 (71%)
Frame = -3
Query: 314 FGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKT 135
+G+ HI++S+N+T +H TD++G ETIARV+GG + RDE SPYAAM AA +AE K
Sbjct: 9 WGIVHIYSSYNNTIIHATDITGAETIARVSGGRVTRNQRDEGSPYAAMQAAFKLAEVLKE 68
Query: 134 LGITALHIKLRATGGNKTKTP 72
GI +HIK+RA GG+ K P
Sbjct: 69 RGIENIHIKVRAPGGSGQKNP 89
Score = 45.6 bits (103), Expect = 5e-04
Identities = 18/27 (66%), Positives = 25/27 (92%)
Frame = -1
Query: 82 QRXPGPGAQSALRAIARSSMKIGRIED 2
Q+ PGPGAQ+A+RA+AR+ ++IGRIED
Sbjct: 86 QKNPGPGAQAAIRALARAGLRIGRIED 112
>UniRef50_Q3LWB9 Cluster: Ribosomal protein S14; n=1; Bigelowiella
natans|Rep: Ribosomal protein S14 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 145
Score = 94.3 bits (224), Expect = 1e-18
Identities = 41/77 (53%), Positives = 56/77 (72%)
Frame = -3
Query: 317 VFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCK 138
+FG+ HI ++ NDT +HVTD++G ETI+R++ G+ +D+ S Y AMLA Q V+ CK
Sbjct: 11 LFGILHILSTKNDTIIHVTDITGSETISRISSGIVATNGKDKKSNYCAMLATQKVSNVCK 70
Query: 137 TLGITALHIKLRATGGN 87
LGI ALHIK+RA GGN
Sbjct: 71 VLGINALHIKIRARGGN 87
>UniRef50_A0SNY7 Cluster: 30S ribosomal protein S11; n=1; uncultured
euryarchaeote ARMAN-2|Rep: 30S ribosomal protein S11 -
uncultured euryarchaeote ARMAN-2
Length = 169
Score = 92.7 bits (220), Expect = 3e-18
Identities = 45/81 (55%), Positives = 59/81 (72%)
Frame = -3
Query: 314 FGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKT 135
+ VAH+++S NDT + +TDLSG ETIA +GGM V AD E SPYAAM AA VA + K
Sbjct: 46 WAVAHVYSSKNDTIITLTDLSGSETIAVGSGGMMVNADSQEGSPYAAMQAAYKVAAEAKE 105
Query: 134 LGITALHIKLRATGGNKTKTP 72
GIT ++I++RA GG+ +KTP
Sbjct: 106 KGITNINIEIRAPGGHGSKTP 126
Score = 35.1 bits (77), Expect = 0.72
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = -1
Query: 79 RXPGPGAQSALRAIARSSMKIGRIED 2
+ PG GAQ+ +R +ARS +++ RIED
Sbjct: 124 KTPGHGAQAVVRVLARSGLRVNRIED 149
>UniRef50_A0RWI9 Cluster: 30S ribosomal protein S11P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S11P -
Cenarchaeum symbiosum
Length = 198
Score = 92.7 bits (220), Expect = 3e-18
Identities = 40/90 (44%), Positives = 61/90 (67%)
Frame = -3
Query: 341 PQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAA 162
P+ + G+AHI++S+N+T +H+TDL+G ET++ +GG+ V ADR E+SP+AAM AA
Sbjct: 66 PETTPADEKLGIAHIYSSYNNTIIHMTDLTGAETVSISSGGVHVNADRYESSPFAAMKAA 125
Query: 161 QDVAEKCKTLGITALHIKLRATGGNKTKTP 72
V E + G T HI++RA GG ++ P
Sbjct: 126 NKVIESARAKGFTGFHIRVRAVGGVGSRVP 155
Score = 42.3 bits (95), Expect = 0.005
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = -1
Query: 79 RXPGPGAQSALRAIARSSMKIGRIED 2
R PGPGAQ+A+RA+AR +IGRI+D
Sbjct: 153 RVPGPGAQAAIRALARGGFRIGRIDD 178
>UniRef50_A7QYG3 Cluster: Chromosome chr17 scaffold_246, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_246, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 182
Score = 86.6 bits (205), Expect = 2e-16
Identities = 42/76 (55%), Positives = 50/76 (65%)
Frame = -3
Query: 245 ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPWS 66
ET+ R TGGMK K D +E+SP AAM AAQDV+++CK L IT LH+KL A GNKTKTP
Sbjct: 50 ETLVRTTGGMKEKTDGEESSPCAAMPAAQDVSQECKELDITVLHVKLHAARGNKTKTPGP 109
Query: 65 WCSVCTSGXCSFKYED 18
CSF E+
Sbjct: 110 GAQSALQAPCSFWNEN 125
>UniRef50_A4D1M5 Cluster: Similar to ribosomal protein S14; n=3;
Homo/Pan/Gorilla group|Rep: Similar to ribosomal protein
S14 - Homo sapiens (Human)
Length = 350
Score = 79.4 bits (187), Expect = 3e-14
Identities = 36/49 (73%), Positives = 42/49 (85%)
Frame = -3
Query: 218 MKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTP 72
MK +AD+DE+SP AML AQDV ++CK LGITALHIKL ATGGN+TKTP
Sbjct: 1 MKEQADQDESSPCTAMLTAQDVVQRCKELGITALHIKLLATGGNRTKTP 49
>UniRef50_A5BMD1 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 104
Score = 73.7 bits (173), Expect = 2e-12
Identities = 35/54 (64%), Positives = 42/54 (77%)
Frame = -3
Query: 245 ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNK 84
ET+ R TGGMK KAD +E+SP AAM AAQDV+++ K L IT LH+KL A GGNK
Sbjct: 29 ETLVRSTGGMKEKADGEESSPCAAMPAAQDVSQRFKELDITVLHVKLHAAGGNK 82
>UniRef50_UPI0000DBF82A Cluster: UPI0000DBF82A related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DBF82A UniRef100 entry -
Rattus norvegicus
Length = 119
Score = 58.4 bits (135), Expect = 7e-08
Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Frame = -3
Query: 353 VTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGR-ETIARVTGGMKVKADRDEASPYA 177
++L PQ + G+ V GV +IFASF D+F++ TD+ G+ T VT MK + E +P
Sbjct: 5 LSLRPQVVEGQNVLGVCYIFASFGDSFIYGTDVYGKVNTCQYVTSRMKTQ--YAETNPCH 62
Query: 176 AMLA-AQDVAEKCKTLGITALHIKLRATGGNKTK 78
+ A DV + K + + ALHI+L+ T G K
Sbjct: 63 RLHAGCLDVTHRFKEMSVPALHIRLQDTEGTWLK 96
>UniRef50_A3A282 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 332
Score = 57.6 bits (133), Expect = 1e-07
Identities = 36/62 (58%), Positives = 39/62 (62%), Gaps = 9/62 (14%)
Frame = -3
Query: 230 VTGGMKVKADRDEASPYAAMLAAQDVAEKCK------TLGITALH---IKLRATGGNKTK 78
V GGMK+KAD DE+SPYAAML +QDVA CK LG L I L A GGNKT
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCKYRTNGQILGDCFLEFCLIMLCAAGGNKTN 270
Query: 77 TP 72
TP
Sbjct: 271 TP 272
Score = 35.9 bits (79), Expect = 0.41
Identities = 19/28 (67%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = -1
Query: 85 KQRXPGPGAQSALR--AIARSSMKIGRI 8
K PGP AQSALR A+ARS M IGRI
Sbjct: 268 KTNTPGPDAQSALRALALARSGMNIGRI 295
>UniRef50_Q5LW33 Cluster: 30S ribosomal protein S11; n=15;
Bacteria|Rep: 30S ribosomal protein S11 - Silicibacter
pomeroyi
Length = 130
Score = 53.6 bits (123), Expect = 2e-06
Identities = 25/76 (32%), Positives = 44/76 (57%)
Frame = -3
Query: 311 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 132
GVAH+ ++FN+T + ++D+ G G M K R +++PYAA LAA+D K +
Sbjct: 20 GVAHVNSTFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQLAAEDAGRKAQDH 78
Query: 131 GITALHIKLRATGGNK 84
G+ L ++++ G +
Sbjct: 79 GVKTLEVEVQGPGSGR 94
>UniRef50_P59378 Cluster: 30S ribosomal protein S11; n=48;
Bacteria|Rep: 30S ribosomal protein S11 - Streptococcus
mutans
Length = 127
Score = 51.2 bits (117), Expect = 1e-05
Identities = 23/76 (30%), Positives = 43/76 (56%)
Frame = -3
Query: 311 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 132
G+AHI A+FN+T V +TD+ G G + K R +++P+AA +AA+ A+ +
Sbjct: 17 GIAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEH 75
Query: 131 GITALHIKLRATGGNK 84
G+ + + ++ G +
Sbjct: 76 GLKTVEVTVKGPGSGR 91
>UniRef50_A6YE90 Cluster: Ribosomal protein S11; n=5; cellular
organisms|Rep: Ribosomal protein S11 - Chlorokybus
atmophyticus (Soil alga)
Length = 262
Score = 50.4 bits (115), Expect = 2e-05
Identities = 28/73 (38%), Positives = 40/73 (54%)
Frame = -3
Query: 311 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 132
GVAHI + N+T + +TDL G +G + K R + S YAA AA+ A+K L
Sbjct: 152 GVAHIQTTLNNTIITITDLDGNTKSWSSSGSIGFKGSRRKTS-YAAQAAAETAAKKSIQL 210
Query: 131 GITALHIKLRATG 93
GI + +K+R G
Sbjct: 211 GIKDVTVKIRGFG 223
>UniRef50_A6PT07 Cluster: Ribosomal protein S11; n=1; Victivallis
vadensis ATCC BAA-548|Rep: Ribosomal protein S11 -
Victivallis vadensis ATCC BAA-548
Length = 148
Score = 48.4 bits (110), Expect = 7e-05
Identities = 24/76 (31%), Positives = 43/76 (56%)
Frame = -3
Query: 311 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 132
G+A++ A+FN+T V TDL G I TGG +++ YAA + A D A+K + +
Sbjct: 38 GIAYVLATFNNTKVTFTDLHG-NVICWSTGGKNGFKGSRKSTAYAAQVIAGDAAKKAQLV 96
Query: 131 GITALHIKLRATGGNK 84
G+ + ++++ G +
Sbjct: 97 GMKEVEVRIKGPGAGR 112
>UniRef50_P59375 Cluster: 30S ribosomal protein S11; n=85; cellular
organisms|Rep: 30S ribosomal protein S11 - Shewanella
oneidensis
Length = 130
Score = 48.0 bits (109), Expect = 1e-04
Identities = 24/73 (32%), Positives = 40/73 (54%)
Frame = -3
Query: 311 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 132
G+AHI ASFN+T V +TD G +GG + R +++P+AA +AA+ +
Sbjct: 20 GMAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQVAAERAGAAAQDY 78
Query: 131 GITALHIKLRATG 93
G+ L + ++ G
Sbjct: 79 GLKNLEVFVKGPG 91
>UniRef50_Q12G79 Cluster: 30S ribosomal protein S11; n=186; cellular
organisms|Rep: 30S ribosomal protein S11 - Polaromonas
sp. (strain JS666 / ATCC BAA-500)
Length = 134
Score = 48.0 bits (109), Expect = 1e-04
Identities = 23/73 (31%), Positives = 40/73 (54%)
Frame = -3
Query: 311 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 132
G+AH+ ASFN+T + +TD G +GG K R +++P+AA +A++
Sbjct: 24 GIAHVHASFNNTIITITDRQGNALSWASSGGQGFKGSR-KSTPFAAQVASEVAGRAAIEQ 82
Query: 131 GITALHIKLRATG 93
GI L ++++ G
Sbjct: 83 GIKNLDVEIKGPG 95
>UniRef50_Q1IS96 Cluster: 30S ribosomal protein S11; n=274; cellular
organisms|Rep: 30S ribosomal protein S11 - Acidobacteria
bacterium (strain Ellin345)
Length = 142
Score = 47.6 bits (108), Expect = 1e-04
Identities = 24/76 (31%), Positives = 42/76 (55%)
Frame = -3
Query: 311 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 132
G+AHI ASFN+T V ++D SG + +G + + R + +P+AA AA A +
Sbjct: 32 GLAHIQASFNNTIVTISDPSGNVVSWKSSGSLGFRGSR-KGTPFAAQQAAMTAANMARDH 90
Query: 131 GITALHIKLRATGGNK 84
G+ +L +++ G +
Sbjct: 91 GMRSLDVRVAGPGSGR 106
>UniRef50_P04969 Cluster: 30S ribosomal protein S11; n=155; cellular
organisms|Rep: 30S ribosomal protein S11 - Bacillus
subtilis
Length = 131
Score = 45.6 bits (103), Expect = 5e-04
Identities = 22/76 (28%), Positives = 41/76 (53%)
Frame = -3
Query: 311 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 132
G+AHI ++FN+T V +TD G G + + R +++P+AA +AA+ A+
Sbjct: 21 GIAHIRSTFNNTIVTITDTHGNAISWSSAGALGFRGSR-KSTPFAAQMAAETAAKGSIEH 79
Query: 131 GITALHIKLRATGGNK 84
G+ L + ++ G +
Sbjct: 80 GLKTLEVTVKGPGSGR 95
>UniRef50_A0NHE9 Cluster: Ribosomal protein S11; n=1; Oenococcus
oeni ATCC BAA-1163|Rep: Ribosomal protein S11 -
Oenococcus oeni ATCC BAA-1163
Length = 113
Score = 45.2 bits (102), Expect = 7e-04
Identities = 28/92 (30%), Positives = 45/92 (48%)
Frame = -3
Query: 311 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 132
GVAHI ++FN+T V +TD +G G + K R +++P+AA LA + A+
Sbjct: 22 GVAHIHSTFNNTIVLITDEAGNAVSWSSAGSLGFKGSR-KSTPFAAQLAGEAAAKAAMEQ 80
Query: 131 GITALHIKLRATGGNKTKTPWSWCSVCTSGXC 36
+ ++ I + K P W +C S C
Sbjct: 81 NMHSVAISV--------KGPGIWTRICNSCCC 104
>UniRef50_Q98Q07 Cluster: 30S ribosomal protein S11; n=33;
Bacteria|Rep: 30S ribosomal protein S11 - Mycoplasma
pulmonis
Length = 136
Score = 44.4 bits (100), Expect = 0.001
Identities = 25/73 (34%), Positives = 41/73 (56%)
Frame = -3
Query: 311 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 132
GVAHI ++ N+T V +D G +G + K + + + YAA LAAQ+ +EK K
Sbjct: 21 GVAHIHSTHNNTIVTFSDEKGNVISWASSGTIGYKGTKKKTA-YAAGLAAQNASEKAKEH 79
Query: 131 GITALHIKLRATG 93
GI + ++++ G
Sbjct: 80 GIREVSVRVKGIG 92
>UniRef50_Q0P3I7 Cluster: Rps11; n=1; Ostreococcus tauri|Rep: Rps11
- Ostreococcus tauri
Length = 121
Score = 42.7 bits (96), Expect = 0.004
Identities = 24/69 (34%), Positives = 35/69 (50%)
Frame = -3
Query: 299 IFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITA 120
I + N+TFV++TDL G +G + K + ++S YAA + V + C I
Sbjct: 15 ISTTLNNTFVNLTDLEGNTLCCVSSGSLGFKGSK-KSSSYAAQSTTEKVLQFCAQQSIEK 73
Query: 119 LHIKLRATG 93
L IKLR G
Sbjct: 74 LMIKLRGVG 82
>UniRef50_Q6ASY6 Cluster: Small subunit ribosomal protein, putative;
n=19; Spermatophyta|Rep: Small subunit ribosomal
protein, putative - Oryza sativa subsp. japonica (Rice)
Length = 366
Score = 42.3 bits (95), Expect = 0.005
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = -3
Query: 302 HIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGIT 123
H+ N TFV VTD+ G + G ++ + R S YAA A+ V + +G+
Sbjct: 248 HVLLKRNKTFVTVTDVRGNKKTGASAGCLEDRKGRSRLSKYAAEATAEHVGRAARKMGLK 307
Query: 122 ALHIKLRAT 96
++ +K++ T
Sbjct: 308 SVVMKVKGT 316
>UniRef50_Q4S8D4 Cluster: Chromosome undetermined SCAF14706, whole
genome shotgun sequence; n=3; cellular organisms|Rep:
Chromosome undetermined SCAF14706, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 215
Score = 41.5 bits (93), Expect = 0.008
Identities = 20/72 (27%), Positives = 41/72 (56%)
Frame = -3
Query: 308 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 129
+AH+ A++N+T + VTD +G+ ++ R + G + + +++P AA A A K G
Sbjct: 106 IAHVKATYNNTHIQVTDSAGK-SMVRTSCGTEGFKNIKKSTPIAAQTAGISAAAKATAKG 164
Query: 128 ITALHIKLRATG 93
+T + + ++ G
Sbjct: 165 VTFVRVVVKGLG 176
>UniRef50_P56802 Cluster: Chloroplast 30S ribosomal protein S11;
n=85; Tracheophyta|Rep: Chloroplast 30S ribosomal
protein S11 - Arabidopsis thaliana (Mouse-ear cress)
Length = 138
Score = 40.3 bits (90), Expect = 0.019
Identities = 23/73 (31%), Positives = 35/73 (47%)
Frame = -3
Query: 311 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 132
GV H+ ASFN+T V VTD+ GR G + R +P+AA AA +
Sbjct: 28 GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTR-RGTPFAAQTAAGNAIRAVVDQ 86
Query: 131 GITALHIKLRATG 93
G+ ++++ G
Sbjct: 87 GMQRAEVRIKGPG 99
>UniRef50_Q2GEB7 Cluster: 30S ribosomal protein S11; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: 30S ribosomal
protein S11 - Neorickettsia sennetsu (strain Miyayama)
Length = 120
Score = 39.9 bits (89), Expect = 0.025
Identities = 21/71 (29%), Positives = 38/71 (53%)
Frame = -3
Query: 317 VFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCK 138
V G AH+ +FN+ ++ VTD G +G + K ++ +++ YAA A + K K
Sbjct: 8 VSGNAHVIVTFNNVYISVTDHQGNVQGWASSGSVGFKGNK-KSTAYAAQSVATTLMTKLK 66
Query: 137 TLGITALHIKL 105
+G+ L++ L
Sbjct: 67 RIGLKILNVHL 77
>UniRef50_Q7YDI4 Cluster: Small subunit ribosomal protein; n=29;
Magnoliophyta|Rep: Small subunit ribosomal protein -
Berberis thunbergii (Japanese barberry)
Length = 150
Score = 39.5 bits (88), Expect = 0.034
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Frame = -3
Query: 308 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 129
+ H+ N+TFV VTD G + G ++ S YAA A+ V + LG
Sbjct: 46 LVHLLPLHNNTFVTVTDARGNKKTGASAGSLEEFKGGSRLSRYAAKATAEHVGRSARNLG 105
Query: 128 ITALHIKLRATGGNKTKTP--WSWCSVCTSGXC 36
+ ++ +K++ + K K SW T C
Sbjct: 106 MKSVVMKVKGSTYFKKKKAVILSWREGYTFAEC 138
>UniRef50_P46746 Cluster: Mitochondrial ribosomal protein S11; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S11 - Prototheca wickerhamii
Length = 128
Score = 39.1 bits (87), Expect = 0.044
Identities = 22/76 (28%), Positives = 39/76 (51%)
Frame = -3
Query: 311 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 132
G+ HI ++ N+T + +TDL G G + K R +++ YA+ AA+ +A K
Sbjct: 18 GIVHIQSTTNNTLITLTDLEGNTQFFVSAGTLGFKNSR-KSTVYASGAAAEALASKAFNE 76
Query: 131 GITALHIKLRATGGNK 84
G + +K++ G K
Sbjct: 77 GYRTIIVKIKGLGYGK 92
>UniRef50_Q9PQN5 Cluster: 30S ribosomal protein S11; n=1; Ureaplasma
parvum|Rep: 30S ribosomal protein S11 - Ureaplasma
parvum (Ureaplasma urealyticum biotype 1)
Length = 121
Score = 38.3 bits (85), Expect = 0.077
Identities = 19/76 (25%), Positives = 42/76 (55%)
Frame = -3
Query: 311 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 132
G+A+I A+ N+T + + D G +G + K + + +PY+A +AA+ A+ +
Sbjct: 12 GIAYIHATKNNTIITLADEQGSVLSWASSGSIGYKGTK-KKTPYSAGIAAEAAAKAVIDM 70
Query: 131 GITALHIKLRATGGNK 84
G+ ++ + + TG ++
Sbjct: 71 GLKSVEVHVNGTGASR 86
>UniRef50_UPI0000586F02 Cluster: PREDICTED: hypothetical protein
isoform 1; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: hypothetical protein isoform 1 -
Strongylocentrotus purpuratus
Length = 261
Score = 36.3 bits (80), Expect = 0.31
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = -3
Query: 308 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 129
+ +I A++N+T V V + +GR T+AR + G + + + + AA AA A K G
Sbjct: 152 IVNIKATYNNTHVSVAEHTGR-TVARTSCGTEGFKNAKKGTAIAAQTAAIAAATKAVDKG 210
Query: 128 ITALHIKLRATG-GNKT 81
+ A+ + ++ G G +T
Sbjct: 211 MNAVRVVIKGIGPGRQT 227
>UniRef50_Q9C6S3 Cluster: 30S ribosomal protein S11, putative; n=2;
Arabidopsis thaliana|Rep: 30S ribosomal protein S11,
putative - Arabidopsis thaliana (Mouse-ear cress)
Length = 235
Score = 35.9 bits (79), Expect = 0.41
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = -3
Query: 323 ETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 144
ET + HI N+TFV VTD G +G + + + Y A A+++ +
Sbjct: 111 ETNADIIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRR 170
Query: 143 CKTLGITALHIKL 105
K +G+ ++ +K+
Sbjct: 171 AKAMGLKSVVVKV 183
>UniRef50_Q9TLV1 Cluster: Chloroplast 30S ribosomal protein S11;
n=10; cellular organisms|Rep: Chloroplast 30S ribosomal
protein S11 - Cyanidium caldarium
Length = 129
Score = 35.9 bits (79), Expect = 0.41
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = -3
Query: 311 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 132
G+ I ++FN+T V TD G+ IA +GG + + +P+AA A + + +
Sbjct: 19 GLIIINSTFNNTIVTATDCYGK-VIAWASGGTEGFKGAKKGTPFAAQSATEKLIKALLEQ 77
Query: 131 GITALHIKLRATG-GNKT 81
G +HI + G G +T
Sbjct: 78 GTQRIHISVSGPGPGRET 95
>UniRef50_O59305 Cluster: Putative uncharacterized protein PH1639;
n=1; Pyrococcus horikoshii|Rep: Putative uncharacterized
protein PH1639 - Pyrococcus horikoshii
Length = 102
Score = 35.5 bits (78), Expect = 0.55
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 144 FLCYILCR---QHSSVG*RFITVSLHLHATSDTGDSFPAG*ISNMNECVI 284
F C+ C +H +G R I VS + H T+ + F G ISN+N VI
Sbjct: 51 FQCFFCCSPSSKHCCIGGRLIPVSFNYHTTAPSAYRFRTGDISNVNNGVI 100
>UniRef50_P30059 Cluster: Plastid 30S ribosomal protein S11; n=4;
Streptophyta|Rep: Plastid 30S ribosomal protein S11 -
Epifagus virginiana (Beechdrops)
Length = 136
Score = 35.5 bits (78), Expect = 0.55
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = -3
Query: 311 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAA 162
GV H+ SFN+T V VTD+ GR G K R + +AA +AA
Sbjct: 28 GVIHVQTSFNNTIVAVTDIKGRVVSWSSAGTCGFKGTR-RGTSFAAQIAA 76
>UniRef50_Q7R4R8 Cluster: GLP_440_63181_70326; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_440_63181_70326 - Giardia lamblia
ATCC 50803
Length = 2381
Score = 33.9 bits (74), Expect = 1.7
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -3
Query: 218 MKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATG-GNKTKTPWSWCSVCTS 45
+ V A R + S Y + + D E C + L +K++ G + WSWC CTS
Sbjct: 2022 LSVVAMRADNSCYPLLFSQYDRLETCAIYLLAELDLKMQEKSLGGVIEQCWSWCMECTS 2080
>UniRef50_Q8W9P7 Cluster: Ribosomal protein S11; n=1; Mesostigma
viride|Rep: Ribosomal protein S11 - Mesostigma viride
Length = 128
Score = 33.1 bits (72), Expect = 2.9
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = -3
Query: 311 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 132
G+ H+ + N+T + +TD G TI + GM + + +A+ AQ + +CK L
Sbjct: 18 GILHVQTTLNNTIMTLTDRKG-NTIFGFSSGMLGFGGSRKKTRFASRSVAQHMVLRCKQL 76
Query: 131 GITALHIKLR 102
I L + ++
Sbjct: 77 RIQRLILAIK 86
>UniRef50_Q49081 Cluster: 30S ribosomal protein; n=1; Mycoplasma
capricolum|Rep: 30S ribosomal protein - Mycoplasma
capricolum
Length = 80
Score = 32.3 bits (70), Expect = 5.1
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -3
Query: 311 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYA 177
G+AHI ++FN+T V V+D G G + K + +++PYA
Sbjct: 11 GIAHIHSTFNNTIVTVSDEKGNVLSWSSAGAIGFKGSK-KSTPYA 54
>UniRef50_Q0CSH9 Cluster: Predicted protein; n=1; Aspergillus
terreus NIH2624|Rep: Predicted protein - Aspergillus
terreus (strain NIH 2624)
Length = 399
Score = 31.9 bits (69), Expect = 6.7
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = +2
Query: 149 LLHPVPPT*QRRVTLHHGQPSPSCHQ*HGR*FPGRINQ*HER 274
L HP P V L HG PSPS + G FPG ++ H R
Sbjct: 12 LPHPHPTLSPASVDLDHGSPSPSLNAVCGPGFPGVLSLHHYR 53
>UniRef50_P25370 Cluster: Good for full DBP5 activity protein 2;
n=2; Saccharomyces cerevisiae|Rep: Good for full DBP5
activity protein 2 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 566
Score = 31.9 bits (69), Expect = 6.7
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -3
Query: 335 HLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASP 183
H G + H+F F D V+ +SG + + +V G +KV +RD P
Sbjct: 461 HNAGNDAYYTLHLFMKFCD--VNFRKISGMDDVLKVMGQVKVWGERDVREP 509
>UniRef50_UPI0001552E13 Cluster: PREDICTED: hypothetical protein;
n=2; Fungi/Metazoa group|Rep: PREDICTED: hypothetical
protein - Mus musculus
Length = 196
Score = 31.5 bits (68), Expect = 8.9
Identities = 19/76 (25%), Positives = 36/76 (47%)
Frame = +1
Query: 148 SATSCAANIAA*GDASSRSAFTFMPPVTRAIVSRPDKSVT*TNVSLNEAKMCATPNTVSP 327
S+++C+ + + SS S+ T T +I S S + T+ S + ++ +T +P
Sbjct: 59 SSSTCSTSTTSSTSTSSTSSSTCSTSTTSSITSSTSTSTSSTSTSSTSSTSTSSTSTSTP 118
Query: 328 TKCWGPRVTWTSSLAT 375
T + TSS +T
Sbjct: 119 TPSTSTSTSTTSSTST 134
>UniRef50_Q8Z9U9 Cluster: DNA replication and repair protein recF;
n=97; Gammaproteobacteria|Rep: DNA replication and
repair protein recF - Yersinia pestis
Length = 361
Score = 31.5 bits (68), Expect = 8.9
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 333 MLGPEGHLDLLFSNFVFSRGHGSAF-SLRAVKI*KHRPAEFI 455
++GP G V++ GHG AF SL+A ++ +H AEF+
Sbjct: 28 LVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRVIRHECAEFV 69
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 483,217,540
Number of Sequences: 1657284
Number of extensions: 9990040
Number of successful extensions: 23353
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 22466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23338
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23931581955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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