Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_H19
(457 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc... 159 1e-40
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa... 159 1e-40
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 28 0.78
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 26 2.4
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 2.4
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 4.2
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 25 4.2
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 24 9.6
SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr ... 24 9.6
>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
S14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 159 bits (387), Expect = 1e-40
Identities = 74/92 (80%), Positives = 81/92 (88%)
Frame = -3
Query: 347 LGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 168
+GPQ GE VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAML
Sbjct: 5 VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64
Query: 167 AAQDVAEKCKTLGITALHIKLRATGGNKTKTP 72
AAQD A KCK +GITALHIK+RATGG TKTP
Sbjct: 65 AAQDAAAKCKEVGITALHIKIRATGGTATKTP 96
Score = 46.8 bits (106), Expect = 2e-06
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = -1
Query: 88 TKQRXPGPGAQSALRAIARSSMKIGRIED 2
T + PGPGAQ+ALRA+AR+ M+IGRIED
Sbjct: 91 TATKTPGPGAQAALRALARAGMRIGRIED 119
>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
S14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 159 bits (387), Expect = 1e-40
Identities = 74/92 (80%), Positives = 81/92 (88%)
Frame = -3
Query: 347 LGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 168
+GPQ GE VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAML
Sbjct: 5 VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64
Query: 167 AAQDVAEKCKTLGITALHIKLRATGGNKTKTP 72
AAQD A KCK +GITALHIK+RATGG TKTP
Sbjct: 65 AAQDAAAKCKEVGITALHIKIRATGGTATKTP 96
Score = 46.8 bits (106), Expect = 2e-06
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = -1
Query: 88 TKQRXPGPGAQSALRAIARSSMKIGRIED 2
T + PGPGAQ+ALRA+AR+ M+IGRIED
Sbjct: 91 TATKTPGPGAQAALRALARAGMRIGRIED 119
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 27.9 bits (59), Expect = 0.78
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 245 ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 144
ET+ V G +KV + + + Y A +AAQ V EK
Sbjct: 347 ETLKAVLGEIKVPTNEEVIAKYVANIAAQLVEEK 380
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 26.2 bits (55), Expect = 2.4
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 337 WGPRVTWTSSLATLFFL 387
+GPR+ WTSS ++L F+
Sbjct: 304 FGPRIFWTSSQSSLMFV 320
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 2.4
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -1
Query: 316 CLV*HTFSLHSMTHSFMLLIYPAGKLSPVSLVA*R*RLTVMKRHPTLLCWR 164
CLV T S++ + + ++ VSLV +L ++KR P LL W+
Sbjct: 317 CLVYSTCSINPIENEAVVTAALKATGGAVSLVDVSKKLPLLKRDPGLLSWK 367
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 4.2
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = -2
Query: 273 RSCY*FIRP--GNYRPCHWWHEGE 208
RSC+ +R N++ C WW EG+
Sbjct: 347 RSCHSALRSIFTNFKGCTWWIEGD 370
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 4.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 16 QSSYLNEQXPEVQTEHQDQGVF 81
+ S N Q P+V+TE Q Q VF
Sbjct: 661 KESNSNTQLPQVETEGQQQSVF 682
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 24.2 bits (50), Expect = 9.6
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -2
Query: 108 APCYWWKQNKDXLVLVL 58
A CYWW ++ + + VL
Sbjct: 854 AMCYWWSKDHENAIKVL 870
>SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 147
Score = 24.2 bits (50), Expect = 9.6
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = -3
Query: 389 PRKNKVAKEEVQVTLGPQHLVGET 318
P +NK K+E+++ + +H++ ET
Sbjct: 77 PPENKDGKQELEIRMNGKHIMFET 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,906,840
Number of Sequences: 5004
Number of extensions: 37603
Number of successful extensions: 92
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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