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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H19
         (457 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)           177   4e-45
At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) simi...   176   5e-45
At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C) ribo...   175   9e-45
At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11, ...    36   0.013
At1g35920.1 68414.m04461 hypothetical protein includes At5g34960...    31   0.37 
At5g34960.1 68418.m04125 hypothetical protein includes At5g34960...    29   2.0  
At2g14450.1 68415.m01617 hypothetical protein includes At5g34960...    29   2.0  
At5g04480.1 68418.m00447 expressed protein                             28   2.6  
At5g53640.1 68418.m06663 F-box family protein contains F-box dom...    27   6.0  
At5g12370.1 68418.m01455 exocyst complex component Sec10-related...    27   6.0  
At2g15620.1 68415.m01789 ferredoxin--nitrite reductase, putative...    27   6.0  
At4g29060.1 68417.m04157 elongation factor Ts family protein sim...    27   7.9  
At1g52780.1 68414.m05966 expressed protein                             27   7.9  

>At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)
          Length = 150

 Score =  177 bits (430), Expect = 4e-45
 Identities = 84/108 (77%), Positives = 94/108 (87%)
 Frame = -3

Query: 395 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 216
           M+ RK K  K +V VTLGP    GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1   MSKRKTKEPKVDV-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGM 59

Query: 215 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTP 72
           KVKADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRATGGNKTKTP
Sbjct: 60  KVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTP 107



 Score = 50.8 bits (116), Expect = 4e-07
 Identities = 23/28 (82%), Positives = 25/28 (89%)
 Frame = -1

Query: 85  KQRXPGPGAQSALRAIARSSMKIGRIED 2
           K + PGPGAQSALRA+ARS MKIGRIED
Sbjct: 103 KTKTPGPGAQSALRALARSGMKIGRIED 130


>At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) similar
           to 40S ribosomal protein S14 GB:P19950 [Zea mays]
          Length = 150

 Score =  176 bits (429), Expect = 5e-45
 Identities = 84/108 (77%), Positives = 93/108 (86%)
 Frame = -3

Query: 395 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 216
           M+ RK K  K E  VTLGP    GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1   MSKRKTKEPKVET-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGM 59

Query: 215 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTP 72
           KVKADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRATGGNKTKTP
Sbjct: 60  KVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTP 107



 Score = 50.8 bits (116), Expect = 4e-07
 Identities = 23/28 (82%), Positives = 25/28 (89%)
 Frame = -1

Query: 85  KQRXPGPGAQSALRAIARSSMKIGRIED 2
           K + PGPGAQSALRA+ARS MKIGRIED
Sbjct: 103 KTKTPGPGAQSALRALARSGMKIGRIED 130


>At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C)
           ribosomal protein S14 -Zea mays,PIR2:A30097
          Length = 150

 Score =  175 bits (427), Expect = 9e-45
 Identities = 83/108 (76%), Positives = 93/108 (86%)
 Frame = -3

Query: 395 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 216
           M+ RK K  K E  VTLGP    GE VFGV H+FASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1   MSKRKTKEPKVE-NVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGM 59

Query: 215 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTP 72
           KVKADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRATGGNKTKTP
Sbjct: 60  KVKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTP 107



 Score = 50.8 bits (116), Expect = 4e-07
 Identities = 23/28 (82%), Positives = 25/28 (89%)
 Frame = -1

Query: 85  KQRXPGPGAQSALRAIARSSMKIGRIED 2
           K + PGPGAQSALRA+ARS MKIGRIED
Sbjct: 103 KTKTPGPGAQSALRALARSGMKIGRIED 130


>At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11,
           putative contains Pfam profile: PF00411: Ribosomal
           protein S11
          Length = 314

 Score = 35.9 bits (79), Expect = 0.013
 Identities = 19/73 (26%), Positives = 35/73 (47%)
 Frame = -3

Query: 323 ETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 144
           ET   + HI    N+TFV VTD  G       +G +       + + Y A   A+++  +
Sbjct: 190 ETNADIIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRR 249

Query: 143 CKTLGITALHIKL 105
            K +G+ ++ +K+
Sbjct: 250 AKAMGLKSVVVKV 262


>At1g35920.1 68414.m04461 hypothetical protein includes At5g34960,
           At2g14450, At1g35920
          Length = 567

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = -3

Query: 143 CKTLGITALHIKLRATG-GNKTKTPWSWCSVCTS 45
           CKT      HI     G  NK K P  WC  CTS
Sbjct: 293 CKTCNKKVNHIHAGVNGVNNKGKKPRFWCDTCTS 326


>At5g34960.1 68418.m04125 hypothetical protein includes At5g34960,
           At2g14450, At1g35920
          Length = 1033

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
 Frame = -3

Query: 143 CKTLGITALHIKLRATG-GNKTKTPWSWCSVCTS 45
           CKT      HI     G  NK K P  WC  C S
Sbjct: 282 CKTCNKKVNHIHAGVNGVNNKGKKPKFWCDTCKS 315


>At2g14450.1 68415.m01617 hypothetical protein includes At5g34960,
           At2g14450, At1g35920
          Length = 544

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
 Frame = -3

Query: 143 CKTLGITALHIKLRATG-GNKTKTPWSWCSVCTS 45
           CKT      HI     G  NK K P  WC  C S
Sbjct: 283 CKTCNKKVNHIHAGVNGVNNKGKKPRFWCETCKS 316


>At5g04480.1 68418.m00447 expressed protein
          Length = 1050

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -3

Query: 125 TALHIKLRATGGNKTKTPWSWCSVCTSGXCSFKYED 18
           T L I   A G     T WS C +   G C   +ED
Sbjct: 813 TRLDIDGDAYGSKNALTFWSMCDILNQGNCRTTFED 848


>At5g53640.1 68418.m06663 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 917

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 374 LCFFSGPWLSL*LESCQNLKA 436
           LC +   WL   LESC NLK+
Sbjct: 807 LCIYDLKWLPTFLESCPNLKS 827


>At5g12370.1 68418.m01455 exocyst complex component Sec10-related
           low similarity to SP|O00471 Exocyst complex component
           Sec10 (hSec10) {Homo sapiens}
          Length = 858

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 227 TGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITA 120
           +GG+++K D +E   +     A  V EK + LGI A
Sbjct: 777 SGGLRLKRDLNEYVGFVKSFGAPSVDEKFELLGIIA 812


>At2g15620.1 68415.m01789 ferredoxin--nitrite reductase, putative
           strong similarity to ferredoxin--nitrite reductase
           [Nicotiana tabacum] GI:19893; contains Pfam profiles
           PF03460: Nitrite/Sulfite reductase ferredoxin-like half
           domain, PF01077: Nitrite and sulphite reductase 4Fe-4S
           domain
          Length = 586

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 22/74 (29%), Positives = 29/74 (39%)
 Frame = -3

Query: 284 NDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKL 105
           ND      +  GR     + GG       +EA P  A + A DV   CK   +   +  L
Sbjct: 265 NDLAYMPANKDGRFGFNLLVGGFFSPKRCEEAIPLDAWVPADDVLPLCK--AVLEAYRDL 322

Query: 104 RATGGNKTKTPWSW 63
             T GN+ KT   W
Sbjct: 323 -GTRGNRQKTRMMW 335


>At4g29060.1 68417.m04157 elongation factor Ts family protein
           similar to SP|P35019 Elongation factor Ts (EF-Ts)
           {Galdieria sulphuraria}; contains Pfam profiles PF00627:
           UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
           S1 RNA binding domain
          Length = 953

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
 Frame = -3

Query: 419 SSQAKG*AMAPRKNKVAKEEVQVTLGPQHLVGET----VFGVAHIFASFNDTFVHVTDLS 252
           +SQ++G A   RK+++   + +  +      G+      FG    F +F D  VHV+ LS
Sbjct: 110 TSQSRGTARPGRKSEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLS 169

Query: 251 G---RETIARVTGGMKVKADRDEA 189
               ++  + VT G +VK    EA
Sbjct: 170 DNFVKDVSSVVTIGQEVKVRLVEA 193


>At1g52780.1 68414.m05966 expressed protein 
          Length = 1059

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = -3

Query: 200 RDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPWSWCSVCTSGXCSFKYE 21
           RDE++P  +     DV +KCK++  +A  +KL     + ++TP       +     F+Y 
Sbjct: 43  RDESAPKISYDRINDVKKKCKSVLSSASELKLE----DISRTPRK-----SKRNLGFRYG 93

Query: 20  DW 15
           DW
Sbjct: 94  DW 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,423,790
Number of Sequences: 28952
Number of extensions: 219422
Number of successful extensions: 533
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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