Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_H19
(457 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A) 177 4e-45
At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) simi... 176 5e-45
At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C) ribo... 175 9e-45
At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11, ... 36 0.013
At1g35920.1 68414.m04461 hypothetical protein includes At5g34960... 31 0.37
At5g34960.1 68418.m04125 hypothetical protein includes At5g34960... 29 2.0
At2g14450.1 68415.m01617 hypothetical protein includes At5g34960... 29 2.0
At5g04480.1 68418.m00447 expressed protein 28 2.6
At5g53640.1 68418.m06663 F-box family protein contains F-box dom... 27 6.0
At5g12370.1 68418.m01455 exocyst complex component Sec10-related... 27 6.0
At2g15620.1 68415.m01789 ferredoxin--nitrite reductase, putative... 27 6.0
At4g29060.1 68417.m04157 elongation factor Ts family protein sim... 27 7.9
At1g52780.1 68414.m05966 expressed protein 27 7.9
>At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)
Length = 150
Score = 177 bits (430), Expect = 4e-45
Identities = 84/108 (77%), Positives = 94/108 (87%)
Frame = -3
Query: 395 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 216
M+ RK K K +V VTLGP GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTKEPKVDV-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 215 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTP 72
KVKADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRATGGNKTKTP
Sbjct: 60 KVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTP 107
Score = 50.8 bits (116), Expect = 4e-07
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = -1
Query: 85 KQRXPGPGAQSALRAIARSSMKIGRIED 2
K + PGPGAQSALRA+ARS MKIGRIED
Sbjct: 103 KTKTPGPGAQSALRALARSGMKIGRIED 130
>At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) similar
to 40S ribosomal protein S14 GB:P19950 [Zea mays]
Length = 150
Score = 176 bits (429), Expect = 5e-45
Identities = 84/108 (77%), Positives = 93/108 (86%)
Frame = -3
Query: 395 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 216
M+ RK K K E VTLGP GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTKEPKVET-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 215 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTP 72
KVKADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRATGGNKTKTP
Sbjct: 60 KVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTP 107
Score = 50.8 bits (116), Expect = 4e-07
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = -1
Query: 85 KQRXPGPGAQSALRAIARSSMKIGRIED 2
K + PGPGAQSALRA+ARS MKIGRIED
Sbjct: 103 KTKTPGPGAQSALRALARSGMKIGRIED 130
>At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C)
ribosomal protein S14 -Zea mays,PIR2:A30097
Length = 150
Score = 175 bits (427), Expect = 9e-45
Identities = 83/108 (76%), Positives = 93/108 (86%)
Frame = -3
Query: 395 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 216
M+ RK K K E VTLGP GE VFGV H+FASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTKEPKVE-NVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 215 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTP 72
KVKADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRATGGNKTKTP
Sbjct: 60 KVKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTP 107
Score = 50.8 bits (116), Expect = 4e-07
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = -1
Query: 85 KQRXPGPGAQSALRAIARSSMKIGRIED 2
K + PGPGAQSALRA+ARS MKIGRIED
Sbjct: 103 KTKTPGPGAQSALRALARSGMKIGRIED 130
>At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11,
putative contains Pfam profile: PF00411: Ribosomal
protein S11
Length = 314
Score = 35.9 bits (79), Expect = 0.013
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = -3
Query: 323 ETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 144
ET + HI N+TFV VTD G +G + + + Y A A+++ +
Sbjct: 190 ETNADIIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRR 249
Query: 143 CKTLGITALHIKL 105
K +G+ ++ +K+
Sbjct: 250 AKAMGLKSVVVKV 262
>At1g35920.1 68414.m04461 hypothetical protein includes At5g34960,
At2g14450, At1g35920
Length = 567
Score = 31.1 bits (67), Expect = 0.37
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = -3
Query: 143 CKTLGITALHIKLRATG-GNKTKTPWSWCSVCTS 45
CKT HI G NK K P WC CTS
Sbjct: 293 CKTCNKKVNHIHAGVNGVNNKGKKPRFWCDTCTS 326
>At5g34960.1 68418.m04125 hypothetical protein includes At5g34960,
At2g14450, At1g35920
Length = 1033
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Frame = -3
Query: 143 CKTLGITALHIKLRATG-GNKTKTPWSWCSVCTS 45
CKT HI G NK K P WC C S
Sbjct: 282 CKTCNKKVNHIHAGVNGVNNKGKKPKFWCDTCKS 315
>At2g14450.1 68415.m01617 hypothetical protein includes At5g34960,
At2g14450, At1g35920
Length = 544
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Frame = -3
Query: 143 CKTLGITALHIKLRATG-GNKTKTPWSWCSVCTS 45
CKT HI G NK K P WC C S
Sbjct: 283 CKTCNKKVNHIHAGVNGVNNKGKKPRFWCETCKS 316
>At5g04480.1 68418.m00447 expressed protein
Length = 1050
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -3
Query: 125 TALHIKLRATGGNKTKTPWSWCSVCTSGXCSFKYED 18
T L I A G T WS C + G C +ED
Sbjct: 813 TRLDIDGDAYGSKNALTFWSMCDILNQGNCRTTFED 848
>At5g53640.1 68418.m06663 F-box family protein contains F-box domain
Pfam:PF00646
Length = 917
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 374 LCFFSGPWLSL*LESCQNLKA 436
LC + WL LESC NLK+
Sbjct: 807 LCIYDLKWLPTFLESCPNLKS 827
>At5g12370.1 68418.m01455 exocyst complex component Sec10-related
low similarity to SP|O00471 Exocyst complex component
Sec10 (hSec10) {Homo sapiens}
Length = 858
Score = 27.1 bits (57), Expect = 6.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 227 TGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITA 120
+GG+++K D +E + A V EK + LGI A
Sbjct: 777 SGGLRLKRDLNEYVGFVKSFGAPSVDEKFELLGIIA 812
>At2g15620.1 68415.m01789 ferredoxin--nitrite reductase, putative
strong similarity to ferredoxin--nitrite reductase
[Nicotiana tabacum] GI:19893; contains Pfam profiles
PF03460: Nitrite/Sulfite reductase ferredoxin-like half
domain, PF01077: Nitrite and sulphite reductase 4Fe-4S
domain
Length = 586
Score = 27.1 bits (57), Expect = 6.0
Identities = 22/74 (29%), Positives = 29/74 (39%)
Frame = -3
Query: 284 NDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKL 105
ND + GR + GG +EA P A + A DV CK + + L
Sbjct: 265 NDLAYMPANKDGRFGFNLLVGGFFSPKRCEEAIPLDAWVPADDVLPLCK--AVLEAYRDL 322
Query: 104 RATGGNKTKTPWSW 63
T GN+ KT W
Sbjct: 323 -GTRGNRQKTRMMW 335
>At4g29060.1 68417.m04157 elongation factor Ts family protein
similar to SP|P35019 Elongation factor Ts (EF-Ts)
{Galdieria sulphuraria}; contains Pfam profiles PF00627:
UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
S1 RNA binding domain
Length = 953
Score = 26.6 bits (56), Expect = 7.9
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Frame = -3
Query: 419 SSQAKG*AMAPRKNKVAKEEVQVTLGPQHLVGET----VFGVAHIFASFNDTFVHVTDLS 252
+SQ++G A RK+++ + + + G+ FG F +F D VHV+ LS
Sbjct: 110 TSQSRGTARPGRKSEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLS 169
Query: 251 G---RETIARVTGGMKVKADRDEA 189
++ + VT G +VK EA
Sbjct: 170 DNFVKDVSSVVTIGQEVKVRLVEA 193
>At1g52780.1 68414.m05966 expressed protein
Length = 1059
Score = 26.6 bits (56), Expect = 7.9
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = -3
Query: 200 RDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPWSWCSVCTSGXCSFKYE 21
RDE++P + DV +KCK++ +A +KL + ++TP + F+Y
Sbjct: 43 RDESAPKISYDRINDVKKKCKSVLSSASELKLE----DISRTPRK-----SKRNLGFRYG 93
Query: 20 DW 15
DW
Sbjct: 94 DW 95
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,423,790
Number of Sequences: 28952
Number of extensions: 219422
Number of successful extensions: 533
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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