Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H18
         (811 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0919 - 22627147-22627326,22627646-22627726,22627827-226281...    31   1.4  
08_02_0921 - 22640125-22640268,22640349-22640423,22640496-226407...    29   5.8  
08_02_0923 - 22649420-22649605,22649694-22649774,22649867-226501...    28   7.6  
04_04_0117 - 22885359-22887065                                         28   7.6  
01_01_0062 + 497728-497922,499444-499481,499576-499598,501156-50...    28   7.6  

>08_02_0919 -
           22627147-22627326,22627646-22627726,22627827-22628103,
           22629451-22629755,22629835-22629987,22630318-22631076
          Length = 584

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 757 ECVPFLSKTSKYMIEQTVIDSTVNIFRCQHALSMASSVLESIPFFFQN 614
           EC  F    +KY++    +  T   F C   LS    VLE +PF F+N
Sbjct: 224 ECCLFGPNYAKYLMRMAHV--TKLSFYCNSILSTEVDVLERLPFLFEN 269


>08_02_0921 -
           22640125-22640268,22640349-22640423,22640496-22640757,
           22642286-22642578,22642609-22642812,22643216-22643901,
           22643958-22644033
          Length = 579

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 682 FRCQHALSMASSVLESIPFFFQN 614
           F C + LS    VLE +PF F+N
Sbjct: 248 FMCHYMLSTEVDVLEQLPFLFEN 270


>08_02_0923 -
           22649420-22649605,22649694-22649774,22649867-22650146,
           22650412-22650716,22650809-22650961,22651425-22652261
          Length = 613

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -1

Query: 757 ECVPFLSKTSKYMIEQTVIDSTVNIFRCQHALSMASSVLESIPFFFQN 614
           EC  F    +KY+     +  T   F C   LS    VLE +PF F+N
Sbjct: 250 ECCLFGLNYAKYLTGMARV--TKLTFYCNCMLSTEVDVLERLPFLFEN 295


>04_04_0117 - 22885359-22887065
          Length = 568

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 637 SIPFFFQNSMENFMNCVIINNR-VGYRQSSVNYTGK 533
           +I F F NS   F NC+II  R +  +Q+SV   G+
Sbjct: 403 TIDFIFGNSAAVFQNCLIITRRPMDNQQNSVTAHGR 438


>01_01_0062 +
           497728-497922,499444-499481,499576-499598,501156-501262,
           501356-501407,501475-501559,501910-502000,502251-502289,
           502383-502455,503285-503344,503439-503512,503606-503698,
           503779-503880,504048-504128,504352-504426,504486-504614,
           504705-504809
          Length = 473

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 470 IVCLMRVPLMRFMANVLFSQEFSC 541
           +VC+  +P ++F    L SQ+F C
Sbjct: 383 LVCISTIPSIKFFKEFLLSQDFGC 406


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,072,995
Number of Sequences: 37544
Number of extensions: 374458
Number of successful extensions: 782
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)