BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P01_pT_H18 (811 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_49519| Best HMM Match : DUF1378 (HMM E-Value=8.8) 34 0.16 SB_48180| Best HMM Match : Sigma70_r4 (HMM E-Value=8) 30 1.9 SB_39837| Best HMM Match : Ion_trans (HMM E-Value=8.5e-12) 30 2.6 SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13) 29 3.4 >SB_49519| Best HMM Match : DUF1378 (HMM E-Value=8.8) Length = 213 Score = 33.9 bits (74), Expect = 0.16 Identities = 13/47 (27%), Positives = 28/47 (59%) Frame = -1 Query: 622 FQNSMENFMNCVIINNRVGYRQSSVNYTGKFLRKQHICHETHQGHTH 482 F S+++F+N + +R +R+ ++ Y +FLR + + +T + H H Sbjct: 23 FNGSLDDFLNDQEVKSRFRFRKDTIEYITQFLRGE-LSRDTRRNHAH 68 >SB_48180| Best HMM Match : Sigma70_r4 (HMM E-Value=8) Length = 183 Score = 30.3 bits (65), Expect = 1.9 Identities = 12/45 (26%), Positives = 27/45 (60%) Frame = -1 Query: 622 FQNSMENFMNCVIINNRVGYRQSSVNYTGKFLRKQHICHETHQGH 488 F S+++F+N + +R +R+ ++ Y +FLR+ + +T + H Sbjct: 24 FNGSLDDFLNDQEVKSRFRFRKDTIEYITQFLRE--LSRDTRRNH 66 >SB_39837| Best HMM Match : Ion_trans (HMM E-Value=8.5e-12) Length = 622 Score = 29.9 bits (64), Expect = 2.6 Identities = 11/32 (34%), Positives = 21/32 (65%) Frame = +3 Query: 180 YANILFNTLELYNKTIIYLKKFNVSLIIKHYT 275 +AN +F L+ + I++L FN+ +++K YT Sbjct: 60 FANAIFIALDANDYEILFLVLFNIEILLKFYT 91 >SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13) Length = 323 Score = 29.5 bits (63), Expect = 3.4 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%) Frame = -1 Query: 703 IDSTVNIFRCQHALSMASSVLESIPFFFQNSMENFMNCVIINN-RV--GYRQSSVNYTG 536 I +T N+F C A S + L S+P F + F++ N R+ + SSV +TG Sbjct: 72 IQTTSNVFLCNLAASDLGATLISLPLAFSWKLSEFLSTDAQNTCRIANAFMMSSVIFTG 130 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 24,305,637 Number of Sequences: 59808 Number of extensions: 476222 Number of successful extensions: 1097 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 1012 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1096 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2251677692 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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