Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H18
         (811 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49519| Best HMM Match : DUF1378 (HMM E-Value=8.8)                   34   0.16 
SB_48180| Best HMM Match : Sigma70_r4 (HMM E-Value=8)                  30   1.9  
SB_39837| Best HMM Match : Ion_trans (HMM E-Value=8.5e-12)             30   2.6  
SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)                 29   3.4  

>SB_49519| Best HMM Match : DUF1378 (HMM E-Value=8.8)
          Length = 213

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 13/47 (27%), Positives = 28/47 (59%)
 Frame = -1

Query: 622 FQNSMENFMNCVIINNRVGYRQSSVNYTGKFLRKQHICHETHQGHTH 482
           F  S+++F+N   + +R  +R+ ++ Y  +FLR + +  +T + H H
Sbjct: 23  FNGSLDDFLNDQEVKSRFRFRKDTIEYITQFLRGE-LSRDTRRNHAH 68


>SB_48180| Best HMM Match : Sigma70_r4 (HMM E-Value=8)
          Length = 183

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = -1

Query: 622 FQNSMENFMNCVIINNRVGYRQSSVNYTGKFLRKQHICHETHQGH 488
           F  S+++F+N   + +R  +R+ ++ Y  +FLR+  +  +T + H
Sbjct: 24  FNGSLDDFLNDQEVKSRFRFRKDTIEYITQFLRE--LSRDTRRNH 66


>SB_39837| Best HMM Match : Ion_trans (HMM E-Value=8.5e-12)
          Length = 622

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 180 YANILFNTLELYNKTIIYLKKFNVSLIIKHYT 275
           +AN +F  L+  +  I++L  FN+ +++K YT
Sbjct: 60  FANAIFIALDANDYEILFLVLFNIEILLKFYT 91


>SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)
          Length = 323

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -1

Query: 703 IDSTVNIFRCQHALSMASSVLESIPFFFQNSMENFMNCVIINN-RV--GYRQSSVNYTG 536
           I +T N+F C  A S   + L S+P  F   +  F++    N  R+   +  SSV +TG
Sbjct: 72  IQTTSNVFLCNLAASDLGATLISLPLAFSWKLSEFLSTDAQNTCRIANAFMMSSVIFTG 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,305,637
Number of Sequences: 59808
Number of extensions: 476222
Number of successful extensions: 1097
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)