Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H18
         (811 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR457213-1|CAG33494.1|  547|Homo sapiens DDX56 protein.                30   8.6  
BC001235-1|AAH01235.1|  547|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ...    30   8.6  
AK222662-1|BAD96382.1|  547|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ...    30   8.6  
AK022774-1|BAB14238.1|  547|Homo sapiens protein ( Homo sapiens ...    30   8.6  
AJ131712-1|CAB87992.1|  547|Homo sapiens nucleolar RNA-helicase ...    30   8.6  
AF247666-1|AAG36876.1|  547|Homo sapiens DEAD-box RNA helicase p...    30   8.6  

>CR457213-1|CAG33494.1|  547|Homo sapiens DDX56 protein.
          Length = 547

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 707 RNRLHSKYFSMSACTLHGLISIRINSIFFSKFNGKFYE 594
           R RL  + FS+  C L+G + +R      S+FN  FY+
Sbjct: 273 RLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYD 310


>BC001235-1|AAH01235.1|  547|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 56 protein.
          Length = 547

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 707 RNRLHSKYFSMSACTLHGLISIRINSIFFSKFNGKFYE 594
           R RL  + FS+  C L+G + +R      S+FN  FY+
Sbjct: 273 RLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYD 310


>AK222662-1|BAD96382.1|  547|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 56 variant protein.
          Length = 547

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 707 RNRLHSKYFSMSACTLHGLISIRINSIFFSKFNGKFYE 594
           R RL  + FS+  C L+G + +R      S+FN  FY+
Sbjct: 273 RLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYD 310


>AK022774-1|BAB14238.1|  547|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12712 fis, clone NT2RP1001080, weakly similar to
           PROBABLE ATP-DEPENDENT RNA HELICASE DBP9. ).
          Length = 547

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 707 RNRLHSKYFSMSACTLHGLISIRINSIFFSKFNGKFYE 594
           R RL  + FS+  C L+G + +R      S+FN  FY+
Sbjct: 273 RLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYD 310


>AJ131712-1|CAB87992.1|  547|Homo sapiens nucleolar RNA-helicase
           protein.
          Length = 547

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 707 RNRLHSKYFSMSACTLHGLISIRINSIFFSKFNGKFYE 594
           R RL  + FS+  C L+G + +R      S+FN  FY+
Sbjct: 273 RLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYD 310


>AF247666-1|AAG36876.1|  547|Homo sapiens DEAD-box RNA helicase
           protein.
          Length = 547

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 707 RNRLHSKYFSMSACTLHGLISIRINSIFFSKFNGKFYE 594
           R RL  + FS+  C L+G + +R      S+FN  FY+
Sbjct: 273 RLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYD 310


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,766,629
Number of Sequences: 237096
Number of extensions: 2287373
Number of successful extensions: 3786
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3786
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10036353240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)