Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H18
         (811 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    26   0.47 
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        25   0.63 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.5  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -2

Query: 453 KLLKCQLLSI*FLFAVWT*HKVVN*SLIVLIGIIRYVYVTFRRRLYKTSSVYS 295
           KL K  L++I   F  WT + V+N S I  +  I  ++  +     K ++VY+
Sbjct: 275 KLAKVALMTISLWFMAWTPYLVINFSGIFNLVKISPLFTIWGSLFAKANAVYN 327


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -2

Query: 453 KLLKCQLLSI*FLFAVWT*HKVVN*SLIVLIGIIRYVYVTFRRRLYKTSSVY 298
           KL K  L++I   F  WT + V+N S I  +  I  ++  +     K ++VY
Sbjct: 25  KLAKVALMTISLWFMAWTPYLVINFSGIFNLVKISPLFTIWGSLFAKANAVY 76


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 134 DCTLQRVVDGXMVEACAICCADNQGHGTRDPETEKEG 24
           DC  + V  G  ++ C    A+ +G G +  +T K+G
Sbjct: 483 DCINRVVQRGTKMQFCIFRTANGRGWGVKTMKTIKKG 519


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,777
Number of Sequences: 438
Number of extensions: 4813
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)