Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H17
         (473 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9G8N5 Cluster: Ribosomal protein S4; n=1; Naegleria gr...    34   1.8  
UniRef50_Q8IM14 Cluster: Putative uncharacterized protein; n=1; ...    33   4.3  
UniRef50_A5K1E6 Cluster: Putative uncharacterized protein; n=1; ...    32   5.6  
UniRef50_Q59LP1 Cluster: Putative uncharacterized protein; n=1; ...    32   5.6  
UniRef50_P34849 Cluster: NADH-ubiquinone oxidoreductase chain 2;...    32   7.4  
UniRef50_Q6LFI7 Cluster: Putative uncharacterized protein; n=1; ...    31   9.8  
UniRef50_A0D5M5 Cluster: Chromosome undetermined scaffold_39, wh...    31   9.8  

>UniRef50_Q9G8N5 Cluster: Ribosomal protein S4; n=1; Naegleria
           gruberi|Rep: Ribosomal protein S4 - Naegleria gruberi
          Length = 482

 Score = 33.9 bits (74), Expect = 1.8
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
 Frame = +2

Query: 83  FNATLIFFLGSPRQNLQY-NIFRFLNTL-EYFKLFFFCDRATLVNCFFFFYNILIRVFDL 256
           FN  +I FL  P Q L   N  +F N + + FK FF   +  L   FFFFY  L+++F  
Sbjct: 101 FNDFIIHFL--PTQLLPLGNRKKFYNLINKKFKRFFILIKKKLNKKFFFFY--LVQMFRK 156

Query: 257 V*SYFDLKKPTFI*RDNDYARFLSYLVLSSFNRRKLVFFYK*KKK 391
           +  +  +K   F+ +      F S L+L +     L ++ +  KK
Sbjct: 157 I-KFLFIKSDAFLNKKTFLFDFFSNLILEAKYSSLLQYYRQHNKK 200


>UniRef50_Q8IM14 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 1702

 Score = 32.7 bits (71), Expect = 4.3
 Identities = 10/48 (20%), Positives = 27/48 (56%)
 Frame = +2

Query: 107 LGSPRQNLQYNIFRFLNTLEYFKLFFFCDRATLVNCFFFFYNILIRVF 250
           +  P  N  Y++F+ L + +   ++FF  +  + +C+ +F  + I+++
Sbjct: 375 MNGPMSNFNYHLFKILCSNDEIYMYFFLFKKFIFSCYIYFNLVSIQIY 422


>UniRef50_A5K1E6 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 1561

 Score = 32.3 bits (70), Expect = 5.6
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +2

Query: 116 PRQNLQYNIFRFLNTLEYFKLFFFCDRATLVNCFFFFYNILIRVF 250
           P  N  Y++++ L   E   ++FF  +  + +C+ +F  + I++F
Sbjct: 431 PMSNFNYHLYKILCGTEDIYMYFFLLKKFIFSCYIYFNLVSIKIF 475


>UniRef50_Q59LP1 Cluster: Putative uncharacterized protein; n=1;
           Candida albicans|Rep: Putative uncharacterized protein -
           Candida albicans (Yeast)
          Length = 102

 Score = 32.3 bits (70), Expect = 5.6
 Identities = 22/70 (31%), Positives = 31/70 (44%)
 Frame = +2

Query: 47  FFLISIKTC*IRFNATLIFFLGSPRQNLQYNIFRFLNTLEYFKLFFFCDRATLVNCFFFF 226
           F ++SI      FN T +FF G       + +F FL  L  F+ F F     L   F F 
Sbjct: 35  FIVLSISFQLGNFNITFLFFFG-----FMFLLFSFLVQLLQFQFFLFLFYVNLSFSFCFT 89

Query: 227 YNILIRVFDL 256
           +NI+    D+
Sbjct: 90  FNIIQNWLDI 99


>UniRef50_P34849 Cluster: NADH-ubiquinone oxidoreductase chain 2;
           n=41; Apis|Rep: NADH-ubiquinone oxidoreductase chain 2 -
           Apis mellifera ligustica (Common honeybee)
          Length = 333

 Score = 31.9 bits (69), Expect = 7.4
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = +2

Query: 26  SFTSRKHFFLISIKTC*IRFNATLIFFLGSPRQNLQYNIFRFLNTLEYFKLFFFCDRATL 205
           SF + K + L  +  C   FN+    F+    +N+ +     L +  YF L  F ++  +
Sbjct: 159 SFYANKFYTLKKLLACSTIFNSFYFIFILELNKNM-FIAMIILYSFNYFLLISFLNKFNI 217

Query: 206 VNCFFFFYN 232
            N  F FYN
Sbjct: 218 QNFNFMFYN 226


>UniRef50_Q6LFI7 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 863

 Score = 31.5 bits (68), Expect = 9.8
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
 Frame = +2

Query: 98  IFFLGSPRQNLQYNIFRFLNTLEYF-KLFFFCDRATLVNCFFFFYNILIRVFDLV*SYFD 274
           I  L +   N+Q ++    + + Y  + F  C        +     I++R+  L+  YF+
Sbjct: 536 ILVLSAHDNNIQVSVRNICDKISYLTQSFVICPHINYKENYLENKKIILRIIMLMLFYFN 595

Query: 275 LKKPTFI*RDNDYARFLSYLVLSSFN 352
           +K    I  DN+ + FL Y  L+++N
Sbjct: 596 IKHMYVICLDNESSMFL-YNFLNTYN 620


>UniRef50_A0D5M5 Cluster: Chromosome undetermined scaffold_39, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_39,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1286

 Score = 31.5 bits (68), Expect = 9.8
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = +2

Query: 125 NLQYNIFR--FLNTLE--YFKLFFFCDRATLVNCFFFFYNILIRVFDLV*SYFDLKKPTF 292
           NL Y +F+  F + L+  +F +F+   +   ++ FF +   + +++DL    F +K P  
Sbjct: 654 NLPYKVFQVSFCDNLQPSFFLIFYELQQMVNISLFFDYQEKVEKLYDLPLHNFQIKIPLN 713

Query: 293 I*RDNDYARFLSY 331
               N Y   L+Y
Sbjct: 714 YQYQNSYLMILAY 726


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 329,437,558
Number of Sequences: 1657284
Number of extensions: 5336994
Number of successful extensions: 11049
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11033
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26450695845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)