Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_H17
         (473 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    22   3.3  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    22   3.3  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    22   3.3  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   5.8  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   7.7  

>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory receptor
           candidate 30 protein.
          Length = 394

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +2

Query: 80  RFNATLIFFLGSPRQN-LQ-YNIF-RFLNTLEYFKLFFFC 190
           R   T++  LG+     LQ + IF + LN +E  +LFF+C
Sbjct: 71  RVGYTIVTILGATFVTVLQLHKIFAKGLNVIEANRLFFYC 110


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +2

Query: 80  RFNATLIFFLGSPRQN-LQ-YNIF-RFLNTLEYFKLFFFC 190
           R   T++  LG+     LQ + IF + LN +E  +LFF+C
Sbjct: 71  RVGYTIVTILGATFVTVLQLHKIFAKGLNVIEANRLFFYC 110


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +2

Query: 80  RFNATLIFFLGSPRQN-LQ-YNIF-RFLNTLEYFKLFFFC 190
           R   T++  LG+     LQ + IF + LN +E  +LFF+C
Sbjct: 71  RVGYTIVTILGATFVTVLQLHKIFAKGLNVIEANRLFFYC 110


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 182 FFCDRATLVNCFFFFYNI 235
           +FC  A  +N   F+Y+I
Sbjct: 384 YFCLMARCLNTLIFYYHI 401


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 88  RYIDFLFGITSSK 126
           RYIDFL+ + S++
Sbjct: 142 RYIDFLYHVLSNE 154


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,423
Number of Sequences: 336
Number of extensions: 1601
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11036865
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)